RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 MAP6Q96JE9 813 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 HDHD2Q9H0R4 259 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 AMBNQ9NP70 447 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PNRC2Q9NPJ4 139 aaKnown RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 DDX28Q9NUL7 540 aaKnown RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 PLEK2Q9NYT0 353 aa10.07□□□□□ -0.8
SCN9A-204ENST00000452182 CNOT2Q9NZN8 540 aaKnown RBP10.07□□□□□ -0.8
SCN9A-204ENST00000452182 ANKHD1Q8IWZ3 2542 aaKnown RBP10.06□□□□□ -0.8
SCN9A-204ENST00000452182 IGHV1-18A0A0C4DH31 117 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 IQCMA0A1B0GVH7 501 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 A1L4Q6 167 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 OR6C6A6NF89 314 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 SYNGR3O43761 229 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 FADS2O95864 444 aaKnown RBP10.06□□□□□ -0.8
SCN9A-204ENST00000452182 LYNP07948 512 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 MRPL3P09001 348 aaKnown RBP10.06□□□□□ -0.8
SCN9A-204ENST00000452182 CCDC159P0C7I6 412 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 PIPP12273 146 aaPredicted RBP10.06□□□□□ -0.8
SCN9A-204ENST00000452182 ACTC1P68032 377 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 ACTA1P68133 377 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 ECH1Q13011 328 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 EIF2B1Q14232 305 aaKnown RBP10.06□□□□□ -0.8
SCN9A-204ENST00000452182 RAB39AQ14964 217 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 SWI5Q1ZZU3 235 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 BEX5Q5H9J7 111 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 ELFN2Q5R3F8 820 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 SP5Q6BEB4 398 aaPredicted RBP10.06□□□□□ -0.8
SCN9A-204ENST00000452182 SLC35F2Q8IXU6 374 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 CPEB3Q8NE35 698 aaKnown RBP10.06□□□□□ -0.8
SCN9A-204ENST00000452182 OR4F15Q8NGB8 312 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 OR10S1Q8NGN2 331 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 AKR7LQ8NHP1 331 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 RNF133Q8WVZ7 376 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 ASB17Q8WXJ9 295 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 COQ7Q99807 217 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 ABHD6Q9BV23 337 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 JAM3Q9BX67 310 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 ESRP2Q9H6T0 727 aaKnown RBP10.06□□□□□ -0.8
SCN9A-204ENST00000452182 LAMP5Q9UJQ1 280 aa10.06□□□□□ -0.8
SCN9A-204ENST00000452182 EFCAB10A6NFE3 127 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 DOK2O60496 412 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 IGHA1P01876 353 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 CECR9P0C854 216 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 CD40P25942 277 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 STOMP27105 288 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 DCKP27707 260 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 ZNF83P51522 516 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 IDH3GP51553 393 aaPredicted RBP10.05□□□□□ -0.8
SCN9A-204ENST00000452182 NR1H2P55055 460 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 ROM1Q03395 351 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 KRTAP27-1Q3LI81 207 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 NCMAPQ5T1S8 102 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 ZNF774Q6NX45 483 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 DEGS2Q6QHC5 323 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 EGFL6Q8IUX8 553 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 BPIFB6Q8NFQ5 453 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 OR1J2Q8NGS2 313 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 OR1F12Q8NHA8 337 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 IPCEF1Q8WWN9 437 aaPredicted RBP10.05□□□□□ -0.8
SCN9A-204ENST00000452182 SLAMF6Q96DU3 332 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 ATF6BQ99941 703 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 C1QTNF6Q9BXI9 259 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 FGF20Q9NP95 211 aaPredicted RBP10.05□□□□□ -0.8
SCN9A-204ENST00000452182 INPP5EQ9NRR6 644 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 UBAP1Q9NZ09 502 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 PSORS1C1Q9UIG5 152 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 COPS3Q9UNS2 423 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 PRR14LQ5THK1 2151 aa10.05□□□□□ -0.8
SCN9A-204ENST00000452182 FASNP49327 2511 aaKnown RBP10.04□□□□□ -0.8
SCN9A-204ENST00000452182 DPRXA6NFQ7 191 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 DEFB108AA8MXU0 73 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 ZNF878C9JN71 531 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 ZNF670-ZNF695F2Z2N8 137 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 M0R1B8 84 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 SLC1A7O00341 560 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 XPNPEP2O43895 674 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 ICMTO60725 284 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 CELA3BP08861 270 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 OTX1P32242 354 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-204ENST00000452182 HCCSP53701 268 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 EGR3Q06889 387 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 RBM48Q5RL73 367 aaKnown RBP10.04□□□□□ -0.8
SCN9A-204ENST00000452182 KCTD18Q6PI47 426 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-204ENST00000452182 LIAT1Q6ZQX7 453 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 MYPOPQ86VE0 399 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-204ENST00000452182 ACBD7Q8N6N7 88 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 SLC30A7Q8NEW0 376 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 OR52I1Q8NGK6 324 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 SMAP2Q8WU79 429 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-204ENST00000452182 THEM6Q8WUY1 208 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 GGHQ92820 318 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 RADILQ96JH8 1075 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 POM121L2Q96KW2 1035 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 AMELYQ99218 206 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 MYCBPQ99417 103 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-204ENST00000452182 FKBP14Q9NWM8 211 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 SCN3BQ9NY72 215 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 PLEKHB1Q9UF11 243 aaPredicted RBP10.04□□□□□ -0.8
SCN9A-204ENST00000452182 KLHDC2Q9Y2U9 406 aa10.04□□□□□ -0.8
SCN9A-204ENST00000452182 PCDHGB5Q9Y5G0 923 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms