RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 NXPH1P58417 271 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 PMPCAQ10713 525 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 ODF4Q2M2E3 257 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 OR5M8Q8NGP6 311 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-207ENST00000433762 NRSN2Q9GZP1 204 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 POFUT1Q9H488 388 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 COA3Q9Y2R0 106 aaPredicted RBP12.23□□□□□ -0.45
COL6A3-207ENST00000433762 FXYD6-FXYD2A0A087WZ82 144 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 A0A1W2PNV4 684 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 NPIPA5E9PKD4 350 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 BPNT1O95861 308 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 FGF2P09038 288 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 EFNA3P52797 238 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 RP1P56715 2156 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 KCNAB1Q14722 419 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 C2orf68Q2NKX9 166 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 GLRX5Q86SX6 157 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 NUBPLQ8TB37 319 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 MFFQ9GZY8 342 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 FXYD6Q9H0Q3 95 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 MOB1AQ9H8S9 216 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 NPIPA1Q9UND3 350 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 SRPK3Q9UPE1 567 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 MRPS18BQ9Y676 258 aaKnown RBP12.23□□□□□ -0.45
COL6A3-207ENST00000433762 PCNX3Q9H6A9 2034 aa12.23□□□□□ -0.45
COL6A3-207ENST00000433762 IGLV3-12A0A075B6K2 115 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 MS4A18H0YCH9 400 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 OR2F2O95006 317 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 FREM3P0C091 2139 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 MSX1P28360 303 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 NUP62P37198 522 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 PPM1FP49593 454 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 CSNK1EP49674 416 aaKnown RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 OR2F1Q13607 317 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 MS4A18Q3C1V0 323 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 SLC25A53Q5H9E4 307 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 C11orf88Q6PI97 169 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 POMZP3Q6PJE2 187 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 PDZD9Q8IXQ8 264 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 DTWD2Q8NBA8 298 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 GALNT11Q8NCW6 608 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 DDIT4LQ96D03 193 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 CHST11Q9NPF2 352 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 DHCR7Q9UBM7 475 aaKnown RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 GTF2A1LQ9UNN4 478 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 B3GALT5Q9Y2C3 310 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 EMC9Q9Y3B6 208 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 REV3LO60673 3130 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 CPED1A4D0V7 1026 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 AMY2AP04746 511 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 RNF4P78317 190 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 EIF3IQ13347 325 aaKnown RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 FAM189A2Q15884 450 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 ETFDHQ16134 617 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 LY6G6FQ5SQ64 297 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 ATPAF1Q5TC12 328 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 DCAF12L2Q5VW00 463 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 ZNF660Q6AZW8 331 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 ZNF529Q6P280 563 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 PAPD4Q6PIY7 484 aaKnown RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 ZNF627Q7L945 461 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 ZNF584Q8IVC4 421 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 SLC38A6Q8IZM9 456 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 PHYHIPLQ96FC7 376 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 ALKBH4Q9NXW9 302 aa12.22□□□□□ -0.45
COL6A3-207ENST00000433762 GPN3Q9UHW5 284 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 GDF2Q9UK05 429 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-207ENST00000433762 TMEM269A0A1B0GVZ9 245 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 CDC14CA4D256 554 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 TOX3O15405 576 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-207ENST00000433762 IL2RAP01589 272 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 ERCC1P07992 297 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-207ENST00000433762 HOXD4P09016 255 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-207ENST00000433762 FBXO45P0C2W1 286 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 SRFP11831 508 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 BDKRB2P30411 391 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 DEFB133Q30KQ1 61 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 ZNF260Q3ZCT1 412 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 LIN54Q6MZP7 749 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 WDR74Q6RFH5 385 aaPredicted RBP12.21□□□□□ -0.45
COL6A3-207ENST00000433762 ZNF813Q6ZN06 617 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 DCXRQ7Z4W1 244 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 SLC25A42Q86VD7 318 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 DUSP19Q8WTR2 217 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 FAM46BQ96A09 425 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 CCDC120Q96HB5 630 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 MKL2Q9ULH7 1088 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 FER1L5A0AVI2 2057 aa12.21□□□□□ -0.45
COL6A3-207ENST00000433762 BRWD1Q9NSI6 2320 aa12.21□□□□□ -0.46
COL6A3-207ENST00000433762 IGLV3-32A0A0A0MS00 114 aa12.21□□□□□ -0.46
COL6A3-207ENST00000433762 EIF1AYO14602 144 aaKnown RBP12.21□□□□□ -0.46
COL6A3-207ENST00000433762 PIAS2O75928 621 aa12.21□□□□□ -0.46
COL6A3-207ENST00000433762 EIF1AXP47813 144 aaKnown RBP12.21□□□□□ -0.46
COL6A3-207ENST00000433762 MELKQ14680 651 aa12.21□□□□□ -0.46
COL6A3-207ENST00000433762 VWA2Q5GFL6 755 aa12.21□□□□□ -0.46
COL6A3-207ENST00000433762 GALNT16Q8N428 558 aa12.21□□□□□ -0.46
COL6A3-207ENST00000433762 BPIFB2Q8N4F0 458 aa12.21□□□□□ -0.46
COL6A3-207ENST00000433762 SLC22A24Q8N4F4 322 aa12.21□□□□□ -0.46
COL6A3-207ENST00000433762 KCNRGQ8N5I3 272 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms