RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 XCR1P46094 333 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 OLIG2Q13516 323 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ACVR1CQ8NER5 493 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 SMCHD1A6NHR9 2005 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 EIF1BO60739 113 aaKnown RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 QDPRP09417 244 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 MRPL2Q5T653 305 aaKnown RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 CLEC4DQ8WXI8 215 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 SIRT3Q9NTG7 399 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 UQCC1Q9NVA1 299 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 NENFQ9UMX5 172 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 TRAV27A0A087WT01 109 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 SEMA7AO75326 666 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 PAFAH1B2P68402 229 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 LEMD1Q68G75 181 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 SLC16A12Q6ZSM3 486 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF761Q86XN6 746 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 KREMEN2Q8NCW0 462 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 DUSP18Q8NEJ0 188 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 CAMTA1Q9Y6Y1 1673 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 FZD9O00144 591 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ST8SIA5O15466 376 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF264O43296 627 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 OR5AC1P0C628 307 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 FABP2P12104 132 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 DUSP3P51452 185 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 OR5I1Q13606 314 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 SLC36A2Q495M3 483 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM123Q8N131 208 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 STACQ99469 402 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 LPAR4Q99677 370 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 CHST6Q9GZX3 395 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 HEMK1Q9Y5R4 338 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 A0A0B4J203 849 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF593O00488 134 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 AKR7A2O43488 359 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 BMP5P22003 454 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 KIR2DL3P43628 341 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 OR8G2PQ6IF36 304 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 PSAPL1Q6NUJ1 521 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 TMEM64Q6YI46 380 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ZNF595Q8IYB9 648 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 SORBS1Q9BX66 1292 aaKnown RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 RNF19AQ9NV58 838 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 FIGNL2A6NMB9 653 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 DBX1A6NMT0 343 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 CLEC3BP05452 202 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 GP1BAP07359 652 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 VIPR2P41587 438 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ACOT4Q8N9L9 421 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 SLC35A4Q96G79 324 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 RAB40CQ96S21 281 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ZFYVE21Q9BQ24 234 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 YIPF1Q9Y548 306 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ECM29Q5VYK3 1845 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 A0A0D9SEW6 157 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 MFNGO00587 321 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 FHITP49789 147 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 MRM1Q6IN84 353 aaKnown RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 ASB11Q8WXH4 323 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 WDR89Q96FK6 387 aaPredicted RBP11.84□□□□□ -0.51
COL6A3-206ENST00000409809 TOPAZ1Q8N9V7 1692 aa11.84□□□□□ -0.51
COL6A3-206ENST00000409809 B4DGG1 531 aa11.83□□□□□ -0.51
COL6A3-206ENST00000409809 GPM6AP51674 278 aa11.83□□□□□ -0.51
COL6A3-206ENST00000409809 BARHL1Q9BZE3 327 aa11.83□□□□□ -0.51
COL6A3-206ENST00000409809 TRAPPC2LQ9UL33 140 aa11.83□□□□□ -0.51
COL6A3-206ENST00000409809 A6NL46 340 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 LDB2O43679 373 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 FGF20Q9NP95 211 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-206ENST00000409809 FOCADQ5VW36 1801 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 TNFSF12O43508 249 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 TUSC2O75896 110 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 GJA4P35212 333 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 ASCL1P50553 236 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 NSUN5P2Q63ZY6 315 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 TMEM81Q6P7N7 255 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 GJC3Q8NFK1 279 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 OR2T10Q8NGZ9 312 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 PCNPQ8WW12 178 aaKnown RBP11.83□□□□□ -0.52
COL6A3-206ENST00000409809 TCTN2Q96GX1 697 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 ACY3Q96HD9 319 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 CPEB1Q9BZB8 566 aaKnown RBP11.83□□□□□ -0.52
COL6A3-206ENST00000409809 FAM206AQ9NX38 181 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 GNG12Q9UBI6 72 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 PLRG1O43660 514 aaKnown RBP11.83□□□□□ -0.52
COL6A3-206ENST00000409809 ZNF28P17035 718 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 AKR1C3P42330 323 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 IKZF1Q13422 519 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 PRAMEF19Q5SWL8 479 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 OR2A2Q6IF42 318 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 WDR1O75083 606 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 CSNK1DP48730 415 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 NLGN4YQ8NFZ3 816 aaPredicted RBP11.83□□□□□ -0.52
COL6A3-206ENST00000409809 UBALD1Q8TB05 177 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 NAT8Q9UHE5 227 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 NACAE9PAV3 2078 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 MAP1LC3B2A6NCE7 125 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 SOWAHBA6NEL2 793 aa11.83□□□□□ -0.52
COL6A3-206ENST00000409809 A6NIN4 97 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms