RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 HHLA2Q9UM44 414 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 PTRH2Q9Y3E5 179 aaKnown RBP11.97□□□□□ -0.49
VPS54-203ENST00000409558 RAF1P04049 648 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 HCKP08631 526 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 IL10RAQ13651 578 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 ZBTB37Q5TC79 503 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 OLFML2AQ68BL7 652 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 STEAP1BQ6NZ63 245 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 H1FNTQ75WM6 255 aaPredicted RBP11.97□□□□□ -0.49
VPS54-203ENST00000409558 KCTD20Q7Z5Y7 419 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 ZNF283Q8N7M2 679 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 OR6N1Q8NGY5 312 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 HLA-CQ95604 372 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 POFUT1Q9H488 388 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 GPR27Q9NS67 375 aa11.97□□□□□ -0.49
VPS54-203ENST00000409558 BOD1L1Q8NFC6 3051 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 TNFRSF10AO00220 468 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 EFNA2O43921 213 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 ZNF254O75437 659 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 CYB5AP00167 134 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 PATE4P0C8F1 98 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 FAM74A1Q5RGS3 127 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 METTL11BQ5VVY1 283 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 AWAT2Q6E213 333 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 FAM57BQ71RH2 274 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 RBM24Q9BX46 236 aaKnown RBP11.96□□□□□ -0.49
VPS54-203ENST00000409558 GPN1Q9HCN4 374 aaPredicted RBP11.96□□□□□ -0.49
VPS54-203ENST00000409558 ZNF407Q9C0G0 2248 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 IGLV1-36A0A0B4J1U3 117 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 EEF1E1-BLOC1S5C9J1V9 151 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 FADS1O60427 444 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 ECDO95905 644 aaPredicted RBP11.96□□□□□ -0.49
VPS54-203ENST00000409558 RAB40ALP0C0E4 278 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 CXADRP78310 365 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 DCDP81605 110 aaKnown RBP11.96□□□□□ -0.49
VPS54-203ENST00000409558 PMPCAQ10713 525 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 BAMBIQ13145 260 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 WDR45BQ5MNZ6 344 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 C9orf135Q5VTT2 229 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 TIGD3Q6B0B8 471 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 RAB40AQ8WXH6 277 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 GPX7Q96SL4 187 aaPredicted RBP11.96□□□□□ -0.49
VPS54-203ENST00000409558 SDHAF3Q9NRP4 125 aa11.96□□□□□ -0.49
VPS54-203ENST00000409558 ANKRD20A5PA0PJZ0 165 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 OR2T1O43869 369 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 HTR3BO95264 441 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 CREB3L2Q70SY1 520 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 PPP1R3BQ86XI6 285 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 TMEM156Q8N614 296 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 SLAMF6Q96DU3 332 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 LIN37Q96GY3 246 aaPredicted RBP11.96□□□□□ -0.5
VPS54-203ENST00000409558 PLEKHA1Q9HB21 404 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 COPZ2Q9P299 210 aa11.96□□□□□ -0.5
VPS54-203ENST00000409558 C5orf63A6NC05 138 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 IGLV3-19P01714 112 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 GLI4P10075 376 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 C17orf67Q0P5P2 114 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 OPCMLQ14982 345 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 HLA-BQ31612 363 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 LYSMD4Q5XG99 296 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 C3orf33Q6P1S2 294 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 OR2AJ1Q8NGZ0 328 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 ADAT3Q96EY9 351 aaPredicted RBP11.95□□□□□ -0.5
VPS54-203ENST00000409558 SERINC1Q9NRX5 453 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 SLC5A6Q9Y289 635 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 EIF4E2O60573 245 aaKnown RBP11.95□□□□□ -0.5
VPS54-203ENST00000409558 SULT1A3P0DMM9 295 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 SULT1A4P0DMN0 295 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 ZNF43P17038 809 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 FAUP35544 74 aaKnown RBP11.95□□□□□ -0.5
VPS54-203ENST00000409558 CLDN17P56750 224 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 BPIFB2Q8N4F0 458 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 ZNF285Q96NJ3 590 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 NICN1Q9BSH3 213 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 CNTD2Q9H8S5 307 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 SCP2D1Q9UJQ7 156 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 MEIKINA0A087WXM9 373 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 LOC100289279A0A1B0GTE1 492 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 ZNF726A6NNF4 738 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 XRCC3O43542 346 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 PMP2P02689 132 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 CXCL2P19875 107 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 CRABP1P29762 137 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 H2BFSP57053 126 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 DYRK1AQ13627 763 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 CFAP77Q6ZQR2 320 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 ARMC10Q8N2F6 343 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 RNF128Q8TEB7 428 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 NARS2Q96I59 477 aaKnown RBP11.95□□□□□ -0.5
VPS54-203ENST00000409558 SULT2B1O00204 365 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 ZNF20P17024 532 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 EGR3Q06889 387 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 UEVLDQ8IX04 471 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 FAM109AQ8N4B1 249 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 OR1J2Q8NGS2 313 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 LRRC20Q8TCA0 184 aa11.95□□□□□ -0.5
VPS54-203ENST00000409558 ICMTO60725 284 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 DCAF7P61962 342 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 TOR2AQ5JU69 321 aa11.94□□□□□ -0.5
VPS54-203ENST00000409558 ANGPTL5Q86XS5 388 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms