RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 ING1Q9UK53 422 aaPredicted RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF346Q9UL40 294 aaKnown RBP11.87□□□□□ -0.51
LIMS1-204ENST00000409441 TMEM14AQ9Y6G1 99 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF462Q96JM2 2506 aa11.87□□□□□ -0.51
LIMS1-204ENST00000409441 A0A0G2JK05 382 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 A0A1W2PRG6 482 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF716A6NP11 495 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 PLGP00747 810 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 IL2RAP01589 272 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 HOXB1P14653 301 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 RAB3BP20337 219 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 THBS2P35442 1172 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 RFX2P48378 723 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 BLVRAP53004 296 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 PER3P56645 1201 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 TRIQKQ629K1 86 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 ABLIM2Q6H8Q1 611 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 TMEM211Q6ICI0 200 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 OR2A2Q6IF42 318 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 NRARPQ7Z6K4 114 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 NR2C2APQ86WQ0 139 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 CDC20BQ86Y33 519 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 TUSC5Q8IXB3 177 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 TIGD4Q8IY51 512 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 IL17RDQ8NFM7 739 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 OR9K2Q8NGE7 335 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 RNF166Q96A37 237 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 INTS12Q96CB8 462 aaKnown RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 DMRTA2Q96SC8 542 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 ZCCHC4Q9H5U6 513 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 MARCH7Q9H992 704 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 FANCFQ9NPI8 374 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 INIPQ9NRY2 104 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 GLRX2Q9NS18 164 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 CYSLTR2Q9NS75 346 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 ACOXLQ9NUZ1 547 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 CLEC4AQ9UMR7 237 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 IGKV3D-15A0A087WSY6 115 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 A0A1B0GUH1 482 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 A0A1W2PNV4 684 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 FAM25AB3EWG3 89 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 FAM25CB3EWG5 89 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 FAM25GB3EWG6 89 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF879B4DU55 563 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 XKRYO14609 159 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 SERPINI2O75830 405 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 YES1P07947 543 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 SLC2A2P11168 524 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 HLA-DOBP13765 273 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF43P17038 809 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 APEX1P27695 318 aaKnown RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 CEACAM8P31997 349 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 TALDO1P37837 337 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 RPS11P62280 158 aaKnown RBP eCLIP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 IL18Q14116 193 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 YIF1BQ5BJH7 314 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 NCCRP1Q6ZVX7 275 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 CREB3L2Q70SY1 520 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 FJX1Q86VR8 437 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 UEVLDQ8IX04 471 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 GCNT2Q8N0V5 402 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 C19orf18Q8NEA5 215 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 HPS1Q92902 700 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 GMPPAQ96IJ6 420 aaPredicted RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 ADAD1Q96M93 576 aaKnown RBP11.86□□□□□ -0.51
LIMS1-204ENST00000409441 TTTY10Q9BZA0 68 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 BCO1Q9HAY6 547 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 GP6Q9HCN6 339 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 ABRACLQ9P1F3 81 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 FKBP7Q9Y680 259 aa11.86□□□□□ -0.51
LIMS1-204ENST00000409441 NOTOA8MTQ0 251 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF724A8MTY0 619 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 GPR171O14626 319 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 ELK1P19419 428 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 NPR2P20594 1047 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 RPL27P61353 136 aaKnown RBP11.85□□□□□ -0.51
LIMS1-204ENST00000409441 POU3F1Q03052 451 aaPredicted RBP11.85□□□□□ -0.51
LIMS1-204ENST00000409441 EGR3Q06889 387 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 FOXF2Q12947 444 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 POU4F3Q15319 338 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 FAM27D1Q5T7N8 215 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 AGAP6Q5VW22 663 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 NHLRC1Q6VVB1 395 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 AKAP14Q86UN6 197 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 Q8N402 240 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 ZIC4Q8N9L1 334 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF511Q8NB15 262 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF519Q8TB69 540 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 ZC3HAV1LQ96H79 300 aaKnown RBP11.85□□□□□ -0.51
LIMS1-204ENST00000409441 CMTM3Q96MX0 182 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 TXNIPQ9H3M7 391 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 WDR76Q9H967 626 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 SRA1Q9HD15 236 aaKnown RBP11.85□□□□□ -0.51
LIMS1-204ENST00000409441 EXTL2Q9UBQ6 330 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 ZNF281Q9Y2X9 895 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 FLVCR1Q9Y5Y0 555 aa11.85□□□□□ -0.51
LIMS1-204ENST00000409441 ARPC4-TTLL3A0A0A6YYG9 625 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 PDCD5O14737 125 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 ARHGEF9O43307 516 aa11.84□□□□□ -0.51
LIMS1-204ENST00000409441 KRT8P05787 483 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms