RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 ZNF704Q6ZNC4 412 aaPredicted RBP11.71□□□□□ -0.54
PTPRN-202ENST00000409251 OR4K17Q8NGC6 315 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 RAB40AQ8WXH6 277 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 FAM3DQ96BQ1 224 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 ARHGDIGQ99819 225 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 LRRC61Q9BV99 259 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 CENPMQ9NSP4 180 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 PUS1Q9Y606 427 aaKnown RBP eCLIP11.71□□□□□ -0.54
PTPRN-202ENST00000409251 MPDZO75970 2070 aa11.71□□□□□ -0.54
PTPRN-202ENST00000409251 A0A0A6YYD5 115 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 MEX3AA1L020 520 aaKnown RBP11.7□□□□□ -0.54
PTPRN-202ENST00000409251 PRR32B1ATL7 298 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 DCTN6O00399 190 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 LRP3O75074 770 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 AQP8O94778 261 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 KNG1P01042 644 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 RPA2P15927 270 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 ABCD3P28288 659 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 SERPINF1P36955 418 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 EIPR1Q53HC9 387 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 AKR7LQ8NHP1 331 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 HLA-CQ95604 372 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 PRSS27Q9BQR3 290 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 KLHDC2Q9Y2U9 406 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 FANCMQ8IYD8 2048 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 H7C417 338 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 GSTZ1O43708 216 aaPredicted RBP11.7□□□□□ -0.54
PTPRN-202ENST00000409251 NME2P1O60361 137 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 NDUFB2O95178 105 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 DBIP07108 87 aaKnown RBP11.7□□□□□ -0.54
PTPRN-202ENST00000409251 OR13C7P0DN81 318 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 TPT1P13693 172 aaKnown RBP11.7□□□□□ -0.54
PTPRN-202ENST00000409251 MUC1P15941 1255 aaPredicted RBP11.7□□□□□ -0.54
PTPRN-202ENST00000409251 SPI1P17947 270 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 RCC1P18754 421 aaPredicted RBP11.7□□□□□ -0.54
PTPRN-202ENST00000409251 PNLIPRP2P54317 469 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 CTXN1P60606 82 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 NR0B2Q15466 257 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 FCRL6Q6DN72 434 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 ACOT7LQ6ZUV0 252 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 SSX9Q7RTT3 188 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 MARCH3Q86UD3 253 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 BHLHE23Q8NDY6 225 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 OR4K14Q8NGD5 310 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 GAL3ST3Q96A11 431 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 CST11Q9H112 138 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 MKKSQ9NPJ1 570 aaPredicted RBP11.7□□□□□ -0.54
PTPRN-202ENST00000409251 MTFP1Q9UDX5 166 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 AMDHD2Q9Y303 409 aa11.7□□□□□ -0.54
PTPRN-202ENST00000409251 ZNF106Q9H2Y7 1883 aaKnown RBP11.7□□□□□ -0.54
PTPRN-202ENST00000409251 HRKO00198 91 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 PMP2P02689 132 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 KLK3P07288 261 aaPredicted RBP11.69□□□□□ -0.54
PTPRN-202ENST00000409251 FOSL1P15407 271 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 NR0B1P51843 470 aaKnown RBP11.69□□□□□ -0.54
PTPRN-202ENST00000409251 ZNF136P52737 540 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 RAB11BQ15907 218 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 CSRP2Q16527 193 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 C1orf189Q5VU69 101 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 SLC48A1Q6P1K1 146 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 CORO6Q6QEF8 472 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 ZFYVE21Q9BQ24 234 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 ZNF251Q9BRH9 671 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 WDR76Q9H967 626 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 PCDH15Q96QU1 1955 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 SPTY2D1-AS1A0A0U1RR47 76 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 EFCAB7A8K855 629 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 B3GALT2O43825 422 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 FGF17O60258 216 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 ADAM11O75078 769 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 IL5P05113 134 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 ERCC1P07992 297 aaPredicted RBP11.69□□□□□ -0.54
PTPRN-202ENST00000409251 RNH1P13489 461 aaKnown RBP11.69□□□□□ -0.54
PTPRN-202ENST00000409251 CD1CP29017 333 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 PRKAR1BP31321 381 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 OR1D4P47884 311 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 DNASE1L1P49184 302 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 NPY4RP50391 375 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 ELFN2Q5R3F8 820 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 TMEM104Q8NE00 496 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 IP6K3Q96PC2 410 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 PAPOLGQ9BWT3 736 aaKnown RBP11.69□□□□□ -0.54
PTPRN-202ENST00000409251 KIF26BQ2KJY2 2108 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 CDC40O60508 579 aaKnown RBP eCLIP11.69□□□□□ -0.54
PTPRN-202ENST00000409251 ITGA5P08648 1049 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 ERGP11308 486 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 TLX1P31314 330 aaPredicted RBP11.69□□□□□ -0.54
PTPRN-202ENST00000409251 EMDP50402 254 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 BTG2P78543 158 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 C4orf17Q53FE4 359 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 RAB11FIP5Q9BXF6 653 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 MRPS33Q9Y291 106 aaKnown RBP11.69□□□□□ -0.54
PTPRN-202ENST00000409251 HEBP2Q9Y5Z4 205 aa11.69□□□□□ -0.54
PTPRN-202ENST00000409251 CCDC163A0A0D9SF12 145 aa11.68□□□□□ -0.54
PTPRN-202ENST00000409251 MPTX1A8MV57 137 aa11.68□□□□□ -0.54
PTPRN-202ENST00000409251 CTAG2O75638 210 aa11.68□□□□□ -0.54
PTPRN-202ENST00000409251 NGFRP08138 427 aa11.68□□□□□ -0.54
PTPRN-202ENST00000409251 CD63P08962 238 aa11.68□□□□□ -0.54
PTPRN-202ENST00000409251 SRFP11831 508 aa11.68□□□□□ -0.54
PTPRN-202ENST00000409251 RABIFP47224 123 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms