RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 LYSMD1Q96S90 227 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 SDF2Q99470 211 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 FKRPQ9H9S5 495 aa9.39□□□□□ -0.91
LIMCH1-203ENST00000396595 TLCD2A6NGC4 264 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 GPR171O14626 319 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 QDPRP09417 244 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 CD46P15529 392 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 RFC3P40938 356 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 PXNP49023 591 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 RPL34P49207 117 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 HOXA1P49639 335 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 GZMKP49863 264 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 CDKN3Q16667 212 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 C9orf135Q5VTT2 229 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 AFMIDQ63HM1 303 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 PRR27Q6MZM9 219 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 FAHD1Q6P587 224 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ACOT7LQ6ZUV0 252 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 CDH26Q8IXH8 852 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 OR4A16Q8NH70 328 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 RLN3Q8WXF3 142 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 THAP10Q9P2Z0 257 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 NOSIPQ9Y314 301 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 NUP98P52948 1817 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 A0A1B0GTW7 788 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 FITM1A5D6W6 292 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 F6UZH7 168 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 HIST1H3AP68431 136 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 DCDP81605 110 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 PRAMEF20Q5VT98 475 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 SH2D5Q6ZV89 423 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 DOK3Q7L591 496 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM217Q8N7C4 229 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 OR13C8Q8NGS7 320 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC25A43Q8WUT9 341 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ZFPM2Q8WW38 1151 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 OPALINQ96PE5 141 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 BCL2L10Q9HD36 194 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF814B7Z6K7 855 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 DOK2O60496 412 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 DIO1P49895 249 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ETFDHQ16134 617 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 EMC4Q5J8M3 183 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 NECAP1Q8NC96 275 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 NUDT8Q8WV74 236 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 PIGTQ969N2 578 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 OR51I2Q9H344 312 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 CCL26Q9Y258 94 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 GOLT1BQ9Y3E0 138 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 HOXC11O43248 304 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 DEDDO75618 318 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 JTBO76095 146 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF90Q03938 601 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ARL16Q0P5N6 197 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 TPBGQ13641 420 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 PAQR6Q6TCH4 344 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 OR51A2Q8NGJ7 313 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 OR11L1Q8NGX0 322 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 HRASLSQ9HDD0 168 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 DAPP1Q9UN19 280 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 KIR2DS1A0A191URI9 304 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 OR5K3A6NET4 321 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 CCSO14618 274 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ABLIM3O94929 683 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 SMIM6P0DI80 62 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ENPP1P22413 925 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 KIR2DS4P43632 304 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 UBE2IP63279 158 aaKnown RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 KIR2DS1Q14954 304 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 PHLDA2Q53GA4 152 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 YOD1Q5VVQ6 348 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC38A6Q8IZM9 456 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ANKLE1Q8NAG6 615 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 LIPHQ8WWY8 451 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC35A4Q96G79 324 aa9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 COA3Q9Y2R0 106 aaPredicted RBP9.38□□□□□ -0.91
LIMCH1-203ENST00000396595 ZFP92A6NM28 416 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 HSPB2A8KAH6 182 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 SNRPGP15A8MWD9 76 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 B4GALT3O60512 393 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 EPHA5P54756 1037 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 HSPB2Q16082 182 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 TMEM81Q6P7N7 255 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 GCNT2Q8N0V5 402 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 GABRG1Q8N1C3 465 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 LINC01465Q8N7H1 131 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 OR2G3Q8NGZ4 309 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 ZNF775Q96BV0 537 aaPredicted RBP9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 ELOVL1Q9BW60 279 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 ZDHHC5Q9C0B5 715 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 PLEKHF2Q9H8W4 249 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 CROCCQ5TZA2 2017 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 LOC107986453A0A1B0GWG9 222 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 HSPB6O14558 160 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 SIGLEC6O43699 453 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 TUSC2O75896 110 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 CSF3P09919 207 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 SLC2A1P11166 492 aa9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 FKBP2P26885 142 aaKnown RBP9.37□□□□□ -0.91
LIMCH1-203ENST00000396595 PLAC9Q5JTB6 97 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms