RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 OR1J1Q8NGS3 322 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 OR2AJ1Q8NGZ0 328 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 C4orf45Q96LM5 186 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 Q96MF0 132 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 COQ7Q99807 217 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 HCAR1Q9BXC0 346 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 ELOVL3Q9HB03 270 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 COMMD3-BMI1R4GMX3 469 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 F8P00451 2351 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 ARFGEF3Q5TH69 2177 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 TVP23AA6NH52 213 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 SAC3D1A6NKF1 404 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 PRR23D1E9PI22 279 aaPredicted RBP18.66■□□□□ 0.58
CLN3-207ENST00000395653 PRR23D2P0DMB1 279 aaPredicted RBP18.66■□□□□ 0.58
CLN3-207ENST00000395653 ZNF250P15622 560 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 IGFBP5P24593 272 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 ERVS71-1P61550 626 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 GABPB1Q06547 395 aaPredicted RBP18.66■□□□□ 0.58
CLN3-207ENST00000395653 ELFN2Q5R3F8 820 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 LINC01590Q5TEZ4 76 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 LYPD4Q6UWN0 246 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 OR6K6Q8NGW6 343 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 PTP4A1Q93096 173 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 PLEKHA8Q96JA3 519 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 SYT3Q9BQG1 590 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 TMUB1Q9BVT8 246 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 MED20Q9H944 212 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 S100A14Q9HCY8 104 aa18.66■□□□□ 0.58
CLN3-207ENST00000395653 TMEFF2Q9UIK5 374 aaPredicted RBP18.66■□□□□ 0.58
CLN3-207ENST00000395653 FLNAP21333 2647 aaKnown RBP18.65■□□□□ 0.58
CLN3-207ENST00000395653 IGLV3-9A0A075B6K5 115 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 ABHD16AO95870 558 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 EFNA4P52798 201 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 NUDT6P53370 316 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 SELENOVP59797 346 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 PCK2Q16822 640 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 TEX30Q5JUR7 227 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 PLBD1Q6P4A8 553 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 CFAP77Q6ZQR2 320 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 RFPL4BQ6ZWI9 263 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 LRP11Q86VZ4 500 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 LURAP1LQ8IV03 231 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 ABHD4Q8TB40 342 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 SYNPRQ8TBG9 265 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 DCLRE1CQ96SD1 692 aaKnown RBP18.65■□□□□ 0.58
CLN3-207ENST00000395653 CIB1Q99828 191 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 RBM4BQ9BQ04 359 aaKnown RBP18.65■□□□□ 0.58
CLN3-207ENST00000395653 PRRG3Q9BZD7 231 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 DYNLRB1Q9NP97 96 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 TBCCD1Q9NVR7 557 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 DUSP13Q9UII6 198 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 FZR1Q9UM11 496 aa18.65■□□□□ 0.58
CLN3-207ENST00000395653 ZNF469Q96JG9 3925 aaPredicted RBP18.64■□□□□ 0.57
CLN3-207ENST00000395653 M0R233 179 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 GLCEO94923 617 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 ENTPD1P49961 510 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 KLF3P57682 345 aaPredicted RBP18.64■□□□□ 0.57
CLN3-207ENST00000395653 PPP1CBP62140 327 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 ECH1Q13011 328 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 SNAPC1Q16533 368 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 CLEC12BQ2HXU8 276 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 DNM1P46Q6ZS02 220 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 ZNF511Q8NB15 262 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 IPCEF1Q8WWN9 437 aaPredicted RBP18.64■□□□□ 0.57
CLN3-207ENST00000395653 OTULINQ96BN8 352 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 SORCS2Q96PQ0 1159 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 VRK1Q99986 396 aaPredicted RBP18.64■□□□□ 0.57
CLN3-207ENST00000395653 WDR76Q9H967 626 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 HINT3Q9NQE9 182 aaKnown RBP18.64■□□□□ 0.57
CLN3-207ENST00000395653 TVP23BQ9NYZ1 205 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 RTTNQ86VV8 2226 aa18.64■□□□□ 0.57
CLN3-207ENST00000395653 H3BSA7 217 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 J3QW42 95 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 PRODHO43272 600 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 SSX4O60224 188 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 NGFP01138 241 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 CD99P14209 185 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 TUBG1P23258 451 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 ZNF718Q3SXZ3 478 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 SLX4IPQ5VYV7 408 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 CPOQ8IVL8 374 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 SLC25A40Q8TBP6 338 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 SLC7A6Q92536 515 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 MARS2Q96GW9 593 aaKnown RBP18.63■□□□□ 0.57
CLN3-207ENST00000395653 MAP6Q96JE9 813 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 PITX2Q99697 317 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 RAB1BQ9H0U4 201 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 OR51V1Q9H2C8 321 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 MS4A5Q9H3V2 200 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 MARCH7Q9H992 704 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 PNRC2Q9NPJ4 139 aaKnown RBP18.63■□□□□ 0.57
CLN3-207ENST00000395653 TUBG2Q9NRH3 451 aa18.63■□□□□ 0.57
CLN3-207ENST00000395653 MYEF2Q9P2K5 600 aaKnown RBP18.63■□□□□ 0.57
CLN3-207ENST00000395653 A0A1W2PPW3 197 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 ZAR1LA6NP61 321 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 F12P00748 615 aaPredicted RBP18.62■□□□□ 0.57
CLN3-207ENST00000395653 ADRA2AP08913 450 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 DBHP09172 617 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 EPHA2P29317 976 aa18.62■□□□□ 0.57
CLN3-207ENST00000395653 RGS6P49758 472 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms