RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 FAM157BP0CG42 384 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 EPXP11678 715 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 SPINK2P20155 84 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF133P52736 654 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 RPS11P62280 158 aaKnown RBP eCLIP16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 BTG1P62324 171 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 SRYQ05066 204 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF169Q14929 603 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 RNPS1Q15287 305 aaKnown RBP16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 C10orf128Q5T292 105 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 ATAD3CQ5T2N8 411 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 AAED1Q7RTV5 226 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 ZSCAN2Q7Z7L9 614 aaPredicted RBP16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 OR2AJ1Q8NGZ0 328 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 OR52N5Q8NH56 324 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 SLC7A6Q92536 515 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 TMEM45BQ96B21 275 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 CREB3L1Q96BA8 519 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 C7orf50Q9BRJ6 194 aaKnown RBP16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 MARVELD1Q9BSK0 173 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 WACQ9BTA9 647 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 MMP28Q9H239 520 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 SEC61A2Q9H9S3 476 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 MALT1Q9UDY8 824 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 SPATA2Q9UM82 520 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 WASF3Q9UPY6 502 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 SSUH2Q9Y2M2 353 aa16.13■□□□□ 0.17
CCDC88C-203ENST00000389856 IGKV3D-15A0A087WSY6 115 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF716A6NP11 495 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 EIF4EP06730 217 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 OR8G3PP0DMU2 310 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 CPN1P15169 458 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 KLK2P20151 261 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 EIF2S3P41091 472 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 RIDAP52758 137 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 RAB25P57735 213 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 KCNMB1Q16558 191 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 FAM27D1Q5T7N8 215 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 C20orf196Q8IYI0 205 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 TMEM123Q8N131 208 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ROBO4Q8WZ75 1007 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF486Q96H40 463 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ST6GAL2Q96JF0 529 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF385AQ96PM9 386 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 THAP7Q9BT49 309 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 TRAF4Q9BUZ4 470 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ULBP2Q9BZM5 246 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 HDHD2Q9H0R4 259 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 DEFB127Q9H1M4 99 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 CCDC86Q9H6F5 360 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 RNF122Q9H9V4 155 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 MRM2Q9UI43 246 aaKnown RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 KLHDC2Q9Y2U9 406 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 A0A0G2JMP0 313 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 A0A0X1KG70 313 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 CTDSPLO15194 276 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 TPPPO94811 219 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 GPANK1O95872 356 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 IGHG3P01860 377 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 FCGR2AP12318 317 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 UCNP55089 124 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 MEP1BQ16820 701 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ZFP69Q49AA0 526 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 CEP78Q5JTW2 689 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 LIPNQ5VXI9 398 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF57Q68EA5 555 aaPredicted RBP16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 MCEMP1Q8IX19 187 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 GPR137CQ8N3F9 429 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 OR4M2Q8NGB6 313 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 C11orf40Q8WZ69 217 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 FOXN4Q96NZ1 517 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 ABHD6Q9BV23 337 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 COMMD4Q9H0A8 199 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 SLITRK2Q9H156 845 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 C1orf198Q9H425 327 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 CAMK2AQ9UQM7 478 aa16.12■□□□□ 0.17
CCDC88C-203ENST00000389856 CENPXA8MT69 81 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 GSTZ1O43708 216 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 MMP15P51511 669 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 OR10A3P58181 314 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 LSM6P62312 80 aaKnown RBP16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 NDUFA5Q16718 116 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 TBRG1Q3YBR2 411 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 FDX2Q6P4F2 183 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 LRRC69Q6ZNQ3 347 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 RHOUQ7L0Q8 258 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 CDH24Q86UP0 819 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 HIST2H2ABQ8IUE6 130 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 SPACA3Q8IXA5 215 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 ZIC4Q8N9L1 334 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 RNF128Q8TEB7 428 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 TRIM63Q969Q1 353 aa16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF275Q9NSD4 429 aaPredicted RBP16.11■□□□□ 0.17
CCDC88C-203ENST00000389856 TMEM212A6NML5 194 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 ZNF724A8MTY0 619 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 DHHO43323 396 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 RPP14O95059 124 aaKnown RBP16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 ABHD16AO95870 558 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 RAF1P04049 648 aa16.1■□□□□ 0.17
CCDC88C-203ENST00000389856 PSKH1P11801 424 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms