RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 NEDD4LQ96PU5 975 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 THAP7Q9BT49 309 aaPredicted RBP22.32■■□□□ 1.16
SHOX2-201ENST00000389589 HDHD2Q9H0R4 259 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 ZNF703Q9H7S9 590 aaPredicted RBP22.32■■□□□ 1.16
SHOX2-201ENST00000389589 HPNP05981 417 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 FSTP19883 344 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 SULF2Q8IWU5 870 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 UBQLNLQ8IYU4 475 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 ABHD1Q96SE0 405 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 MOB1AQ9H8S9 216 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 ASH2LQ9UBL3 628 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 FOXD3Q9UJU5 478 aaPredicted RBP22.32■■□□□ 1.16
SHOX2-201ENST00000389589 RCE1Q9Y256 329 aa22.32■■□□□ 1.16
SHOX2-201ENST00000389589 A0A1B0GVC2 190 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 LOC107986453A0A1B0GWG9 222 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 A6NIN4 97 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 TNFRSF10AO00220 468 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 CXCL13O43927 109 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 MSR1P21757 451 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 MAP2K3P46734 347 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 FCRLAQ7L513 359 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 CMTM4Q8IZR5 234 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 GALNT16Q8N428 558 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 CELF2-AS1Q8N7Q2 184 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 OR10D3Q8NH80 312 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 SLC39A7Q92504 469 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 NELFAQ9H3P2 528 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 OR5V1Q9UGF6 321 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 STEAP1Q9UHE8 339 aa22.31■■□□□ 1.16
SHOX2-201ENST00000389589 HSD11B1P28845 292 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 STARP49675 285 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 MMP15P51511 669 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 TAF13Q15543 124 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 C20orf196Q8IYI0 205 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 DTX3Q8N9I9 347 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 OR13C3Q8NGS6 347 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 ENKURQ8TC29 256 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 RAB40AQ8WXH6 277 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 CPNE4Q96A23 557 aaPredicted RBP22.3■■□□□ 1.16
SHOX2-201ENST00000389589 ZC3HAV1LQ96H79 300 aaKnown RBP22.3■■□□□ 1.16
SHOX2-201ENST00000389589 ABCG5Q9H222 651 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 RBFOX1Q9NWB1 397 aaKnown RBP22.3■■□□□ 1.16
SHOX2-201ENST00000389589 PLA2G3Q9NZ20 509 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 DHHO43323 396 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 LYRM1O43325 122 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 RRADP55042 308 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 ZNF57Q68EA5 555 aaPredicted RBP22.3■■□□□ 1.16
SHOX2-201ENST00000389589 ABLIM2Q6H8Q1 611 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 ELMOD2Q8IZ81 293 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 DNAAF1Q8NEP3 725 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 KLF13Q9Y2Y9 288 aaPredicted RBP22.3■■□□□ 1.16
SHOX2-201ENST00000389589 FLVCR1Q9Y5Y0 555 aa22.3■■□□□ 1.16
SHOX2-201ENST00000389589 EP300Q09472 2414 aaPredicted RBP22.29■■□□□ 1.16
SHOX2-201ENST00000389589 PTPRBP23467 1997 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 CTDSPLO15194 276 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 RANBP1P43487 201 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 SELENOPP49908 381 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 ZNF84P51523 738 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 PSMA6P60900 246 aaKnown RBP22.29■■□□□ 1.16
SHOX2-201ENST00000389589 SGCAQ16586 387 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 PHYHD1Q5SRE7 291 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 DRAXINQ8NBI3 349 aaPredicted RBP22.29■■□□□ 1.16
SHOX2-201ENST00000389589 TRIM63Q969Q1 353 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 PBOV1Q9GZY1 135 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 ZNF716A6NP11 495 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 CLDN12P56749 244 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 SLC25A38Q96DW6 304 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 S100A16Q96FQ6 103 aaKnown RBP22.29■■□□□ 1.16
SHOX2-201ENST00000389589 AGAP4Q96P64 663 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 HES7Q9BYE0 225 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 ULBP2Q9BZM5 246 aa22.29■■□□□ 1.16
SHOX2-201ENST00000389589 NCOA6Q14686 2063 aaPredicted RBP22.28■■□□□ 1.16
SHOX2-201ENST00000389589 IGFBP3P17936 291 aaPredicted RBP22.28■■□□□ 1.16
SHOX2-201ENST00000389589 ART1P52961 327 aa22.28■■□□□ 1.16
SHOX2-201ENST00000389589 SOX8P57073 446 aa22.28■■□□□ 1.16
SHOX2-201ENST00000389589 TGIF1Q15583 401 aa22.28■■□□□ 1.16
SHOX2-201ENST00000389589 IGF2-ASQ6U949 168 aa22.28■■□□□ 1.16
SHOX2-201ENST00000389589 CHAC2Q8WUX2 184 aa22.28■■□□□ 1.16
SHOX2-201ENST00000389589 ZNF416Q9BWM5 594 aa22.28■■□□□ 1.16
SHOX2-201ENST00000389589 TTTY12Q9BZ98 90 aa22.28■■□□□ 1.16
SHOX2-201ENST00000389589 ASCL3Q9NQ33 180 aa22.28■■□□□ 1.16
SHOX2-201ENST00000389589 NUFIP1Q9UHK0 495 aaKnown RBP22.28■■□□□ 1.16
SHOX2-201ENST00000389589 MEGF11A6BM72 1044 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 OR5H15A6NDH6 313 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 EEF1E1O43324 174 aaKnown RBP22.27■■□□□ 1.16
SHOX2-201ENST00000389589 TTRP02766 147 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 SP1P08047 785 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 CSRP1P21291 193 aaKnown RBP22.27■■□□□ 1.16
SHOX2-201ENST00000389589 CLDN15P56746 228 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 GRB2P62993 217 aaKnown RBP22.27■■□□□ 1.16
SHOX2-201ENST00000389589 SLC25A25Q6KCM7 469 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 MDS2Q8NDY4 140 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 PNRC2Q9NPJ4 139 aaKnown RBP22.27■■□□□ 1.16
SHOX2-201ENST00000389589 CDV3Q9UKY7 258 aaKnown RBP22.27■■□□□ 1.16
SHOX2-201ENST00000389589 MRPS7Q9Y2R9 242 aaKnown RBP22.27■■□□□ 1.16
SHOX2-201ENST00000389589 P2RY10O00398 339 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 GSTZ1O43708 216 aaPredicted RBP22.27■■□□□ 1.16
SHOX2-201ENST00000389589 NME2P1O60361 137 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 ACSM4P0C7M7 580 aa22.27■■□□□ 1.16
SHOX2-201ENST00000389589 LIPCP11150 499 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms