RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 PATE4P0C8F1 98 aa23.55■■□□□ 1.36
MSX1-201ENST00000382723 PAX7P23759 505 aa23.55■■□□□ 1.36
MSX1-201ENST00000382723 FOXF2Q12947 444 aa23.55■■□□□ 1.36
MSX1-201ENST00000382723 RPRMLQ8N4K4 120 aa23.55■■□□□ 1.36
MSX1-201ENST00000382723 KBTBD8Q8NFY9 601 aa23.55■■□□□ 1.36
MSX1-201ENST00000382723 RPS4Y2Q8TD47 263 aa23.55■■□□□ 1.36
MSX1-201ENST00000382723 A0A096LPE4 126 aa23.54■■□□□ 1.36
MSX1-201ENST00000382723 A0A1W2PPZ6 126 aa23.54■■□□□ 1.36
MSX1-201ENST00000382723 KIR2DL2P43627 348 aaPredicted RBP23.54■■□□□ 1.36
MSX1-201ENST00000382723 WDR38Q5JTN6 314 aa23.54■■□□□ 1.36
MSX1-201ENST00000382723 SLC16A14Q7RTX9 510 aa23.54■■□□□ 1.36
MSX1-201ENST00000382723 SKA3Q8IX90 412 aa23.54■■□□□ 1.36
MSX1-201ENST00000382723 OR5AK2Q8NH90 309 aa23.54■■□□□ 1.36
MSX1-201ENST00000382723 SLC5A6Q9Y289 635 aa23.54■■□□□ 1.36
MSX1-201ENST00000382723 MBD3L4A6NDZ8 208 aaPredicted RBP23.53■■□□□ 1.36
MSX1-201ENST00000382723 MBD3L3A6NE82 208 aaPredicted RBP23.53■■□□□ 1.36
MSX1-201ENST00000382723 MBD3L5A6NJ08 208 aaPredicted RBP23.53■■□□□ 1.36
MSX1-201ENST00000382723 HSD11B1P28845 292 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 PTGER4P35408 488 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 TRAM1Q15629 374 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 VWA1Q6PCB0 445 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 ABHD12BQ7Z5M8 362 aaPredicted RBP23.53■■□□□ 1.36
MSX1-201ENST00000382723 MS4A15Q8N5U1 240 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 MBD3L2Q8NHZ7 208 aaPredicted RBP23.53■■□□□ 1.36
MSX1-201ENST00000382723 PPP1R14AQ96A00 147 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 C4orf45Q96LM5 186 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 BRD7Q9NPI1 651 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 MALT1Q9UDY8 824 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 SLC22A13Q9Y226 551 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 GSTK1Q9Y2Q3 226 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 R4GMQ9 66 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 FARS2O95363 451 aaKnown RBP23.53■■□□□ 1.36
MSX1-201ENST00000382723 KIR3DL2P43630 455 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 TFAP2EQ6VUC0 442 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 ALDH16A1Q8IZ83 802 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 GALNT8Q9NY28 637 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 ZNF281Q9Y2X9 895 aa23.53■■□□□ 1.36
MSX1-201ENST00000382723 SVILO95425 2214 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 TMEM269A0A1B0GVZ9 245 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 TTLL8A6PVC2 850 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 CD1AP06126 327 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 FGF9P31371 208 aaPredicted RBP23.52■■□□□ 1.36
MSX1-201ENST00000382723 UGT2B10P36537 528 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 HIST1H3AP68431 136 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 LY6DQ14210 128 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 STK11Q15831 433 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 ACSM3Q53FZ2 586 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 CCDC92Q53HC0 331 aaPredicted RBP23.52■■□□□ 1.36
MSX1-201ENST00000382723 HIST2H3PS2Q5TEC6 136 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 FDX2Q6P4F2 183 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 HIST2H3AQ71DI3 136 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 CEACAM19Q7Z692 300 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 ZNF676Q8N7Q3 588 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 FGFBP3Q8TAT2 258 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 DYNC2LI1Q8TCX1 351 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 KCTD7Q96MP8 289 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 COQ7Q99807 217 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 PLEK2Q9NYT0 353 aa23.52■■□□□ 1.36
MSX1-201ENST00000382723 OR4C45A6NMZ5 311 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 LOC110117498-PIK3R3F6TDL0 507 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 GPRIN2O60269 458 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 SRSF10O75494 262 aaKnown RBP23.51■■□□□ 1.35
MSX1-201ENST00000382723 TOXO94900 526 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 PRKXP51817 358 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 CATSPERDQ86XM0 798 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 RDH10Q8IZV5 341 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 KCNN2Q9H2S1 579 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 CACNA1CQ13936 2221 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 H3BSH0 61 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 PRRG2O14669 202 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 ZNF32P17041 273 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 RPS11P62280 158 aaKnown RBP eCLIP23.51■■□□□ 1.35
MSX1-201ENST00000382723 GALK2Q01415 458 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 ZNF829Q3KNS6 432 aaPredicted RBP23.51■■□□□ 1.35
MSX1-201ENST00000382723 RHOUQ7L0Q8 258 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 OR6K3Q8NGY3 331 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 RGP1Q92546 391 aaPredicted RBP23.51■■□□□ 1.35
MSX1-201ENST00000382723 TSC22D3Q99576 134 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 COMMD4Q9H0A8 199 aa23.51■■□□□ 1.35
MSX1-201ENST00000382723 DOK2O60496 412 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 GALP22466 123 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 MPGP29372 298 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 NRN1LQ496H8 165 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 ELFN2Q5R3F8 820 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 FAM27D1Q5T7N8 215 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 ZNF544Q6NX49 715 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 IL17RDQ8NFM7 739 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 ATF6BQ99941 703 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 OR52A1Q9UKL2 312 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 N6AMT1Q9Y5N5 214 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 MED12LQ86YW9 2145 aa23.5■■□□□ 1.35
MSX1-201ENST00000382723 TMEM212A6NML5 194 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 SGCEO43556 437 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 SLC19A2O60779 497 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 SERPINA3P01011 423 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 ITGA5P08648 1049 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 CCR9P51686 369 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 MXD1Q05195 221 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 DOLPP1Q86YN1 238 aa23.49■■□□□ 1.35
MSX1-201ENST00000382723 OR14A2Q96R54 314 aa23.49■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms