RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 CSF3P09919 207 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 PRPS1L1P21108 318 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 HMGCLP35914 325 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 RAP1BP61224 184 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 RAP1AP62834 184 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ECSCRQ19T08 205 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR52P1PQ8NH57 321 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SYNPRQ8TBG9 265 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 BRI3BPQ8WY22 251 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 DVL3Q92997 716 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 C1GALT1Q9NS00 363 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR6C2Q9NZP2 312 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 LGALS13Q9UHV8 139 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FBXL4Q9UKA2 621 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 EXOSC1Q9Y3B2 195 aaKnown RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 DNAJC25-GNG10A0A024R161 153 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FAM183AA6NL82 134 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SCRG1O75711 98 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CLDN7O95471 211 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 GSRP00390 522 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 RAB40ALP0C0E4 278 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF25P17030 456 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CXCL9Q07325 125 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 MGAT3Q09327 533 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TM4SF20Q53R12 229 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FAM162BQ5T6X4 162 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 C9orf57Q5W0N0 161 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 LEMD1Q68G75 181 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 LIPIQ6XZB0 460 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ZNF429Q86V71 674 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR52N2Q8NGI0 321 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TRIB3Q96RU7 358 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 GEMIN7Q9H840 131 aaKnown RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SLC25A19Q9HC21 320 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SDR39U1Q9NRG7 319 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TMEM94Q12767 1356 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR2A25A4D2G3 310 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 MYADML2A6NDP7 307 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 BTNL10A8MVZ5 291 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SIRPB1O00241 398 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SH2D1BO14796 132 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 EGFP01133 1207 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 IGKV3-20P01619 116 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ADRA1BP35368 520 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CLTCL1P53675 1640 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TGFB2P61812 414 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 PPP1CAP62136 330 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 HMGXB3Q12766 1538 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 GGTLC2Q14390 218 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SHHQ15465 462 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FCN2Q15485 313 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CYP1B1Q16678 543 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 EFCAB6Q5THR3 1501 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 PLBD1Q6P4A8 553 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TMIGD2Q96BF3 282 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 GABARAPL3Q9BY60 117 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SFXN1Q9H9B4 322 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SEBOXQ9HB31 216 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FAM212BQ9NTI7 297 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 MAP2P11137 1827 aaKnown RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 LOC100130705A0A1B0GUX0 176 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 TBX10O75333 385 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 HSBP1O75506 76 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CRPP02741 224 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SLC25A4P12235 298 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CYBAP13498 195 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ADRA2CP18825 462 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CSNK1DP48730 415 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CSNK1EP49674 416 aaKnown RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 EFNB1P98172 346 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FRG2Q64ET8 278 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 OR8A1Q8NGG7 326 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ZFPM2Q8WW38 1151 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 DEDD2Q8WXF8 326 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FBXL18Q96ME1 805 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 DUX5Q96PT3 197 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FRG2BQ96QU4 278 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 ADOQ96SZ5 270 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 DERL2Q9GZP9 239 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 C20orf85Q9H1P6 137 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 PLEKHF2Q9H8W4 249 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 CYSLTR2Q9NS75 346 aa4.27□□□□□ -1.73
SCN1A-202ENST00000375405 SIRT3Q9NTG7 399 aaPredicted RBP4.27□□□□□ -1.73
SCN1A-202ENST00000375405 FOXE1O00358 373 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 DSCR3O14972 297 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 CA12O43570 354 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SSSCA1O60232 199 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 DUS4LO95620 317 aaKnown RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 MYF5P13349 255 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GGT5P36269 586 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 NOVA1P51513 510 aaKnown RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 DAG1Q14118 895 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 RPUSD4Q96CM3 377 aaKnown RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 TNFRSF13CQ96RJ3 184 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 TBX15Q96SF7 602 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 GSX1Q9H4S2 264 aaPredicted RBP4.26□□□□□ -1.73
SCN1A-202ENST00000375405 SLC22A7Q9Y694 548 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 UNC13BO14795 1591 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 MAGI3Q5TCQ9 1506 aa4.26□□□□□ -1.73
SCN1A-202ENST00000375405 LRRIQ1Q96JM4 1722 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms