RNA–Protein interactions for RNA: ENST00000374730.2

USP48-202, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 570 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-202ENST00000374730 KLHL24Q6TFL4 600 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 PLET1Q6UQ28 207 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 UNQ9370/PRO34162Q6UXP9 181 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 BAIAP2L2Q6UXY1 529 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 SSX6Q7RTT6 188 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 FAM122BQ7Z309 247 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 CEACAM19Q7Z692 300 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 TCTE3Q8IZS6 198 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 EXD3Q8N9H8 876 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 LRRC75AQ8NAA5 344 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 NPEPL1Q8NDH3 523 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 C17orf47Q8NEP4 570 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 OR4M1Q8NGD0 313 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 OR4C3Q8NH37 302 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 OR4K13Q8NH42 304 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 TRMT10AQ8TBZ6 339 aaKnown RBP4.27□□□□□ -1.73
USP48-202ENST00000374730 PTPMT1Q8WUK0 201 aaPredicted RBP4.27□□□□□ -1.73
USP48-202ENST00000374730 NPIPB3Q92617 1050 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 GHSRQ92847 366 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 CREB3L1Q96BA8 519 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 ZMYND19Q96E35 227 aaPredicted RBP4.27□□□□□ -1.73
USP48-202ENST00000374730 ARSGQ96EG1 525 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 KTI12Q96EK9 354 aaPredicted RBP4.27□□□□□ -1.73
USP48-202ENST00000374730 PELI1Q96FA3 418 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 ART5Q96L15 291 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 TGM7Q96PF1 710 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 MARVELD1Q9BSK0 173 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 PHF7Q9BWX1 381 aaPredicted RBP4.27□□□□□ -1.73
USP48-202ENST00000374730 KRTAP2-2Q9BYT5 123 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 LAT2Q9GZY6 243 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 MMP28Q9H239 520 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 PPIL3Q9H2H8 161 aaKnown RBP4.27□□□□□ -1.73
USP48-202ENST00000374730 LMAN1LQ9HAT1 526 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 MMP25Q9NPA2 562 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 CUTCQ9NTM9 273 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 C2orf42Q9NWW7 574 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 SOHLH2Q9NX45 425 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 FBXL4Q9UKA2 621 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 MRTO4Q9UKD2 239 aaKnown RBP4.27□□□□□ -1.73
USP48-202ENST00000374730 POU2F3Q9UKI9 436 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 MOKQ9UQ07 419 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 RASD1Q9Y272 281 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 TMEM184BQ9Y519 407 aaPredicted RBP4.27□□□□□ -1.73
USP48-202ENST00000374730 N6AMT1Q9Y5N5 214 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 IER3IP1Q9Y5U9 82 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 PRUNE2Q8WUY3 3088 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 CACNA1EQ15878 2313 aa4.27□□□□□ -1.73
USP48-202ENST00000374730 UNC13CQ8NB66 2214 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 ASXL3Q9C0F0 2248 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 PCNX3Q9H6A9 2034 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 ARPC4-TTLL3A0A0A6YYG9 625 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 A0A0G2JMP0 313 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 A0A0X1KG70 313 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 LINC00854A0A1B0GVQ3 168 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 FAM240BA0A1B0GVZ2 78 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 A0A1W2PPC1 479 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 A0A1W2PRG6 482 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 OR6C68A6NDL8 312 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 OR6C76A6NM76 312 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 CENPXA8MT69 81 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 FAM25AB3EWG3 89 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 FAM25CB3EWG5 89 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 FAM25GB3EWG6 89 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 ZNF879B4DU55 563 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 LRRN3E7EW58 273 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 TFECO14948 347 aaPredicted RBP4.26□□□□□ -1.73
USP48-202ENST00000374730 CTDSPLO15194 276 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 FLRT2O43155 660 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 DUX1O43812 170 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 ORC5O43913 435 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 CDC40O60508 579 aaKnown RBP eCLIP4.26□□□□□ -1.73
USP48-202ENST00000374730 EIF4E2O60573 245 aaKnown RBP4.26□□□□□ -1.73
USP48-202ENST00000374730 SELENOFO60613 162 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 TSPAN2O60636 221 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 OR2B3O76000 313 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 UBL3O95164 117 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 UTS2O95399 124 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 DDAH2O95865 285 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 EIF4EP06730 217 aaKnown RBP4.26□□□□□ -1.73
USP48-202ENST00000374730 YES1P07947 543 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 ASAH2BP0C7U1 165 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 EPHA8P29322 1005 aaPredicted RBP4.26□□□□□ -1.73
USP48-202ENST00000374730 SLC6A1P30531 599 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 ACVR1BP36896 505 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 NAA10P41227 235 aaPredicted RBP4.26□□□□□ -1.73
USP48-202ENST00000374730 PITPNBP48739 271 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 INPP1P49441 399 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 RAB25P57735 213 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 OR10A3P58181 314 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 RPS11P62280 158 aaKnown RBP eCLIP4.26□□□□□ -1.73
USP48-202ENST00000374730 SIRPAP78324 504 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 IFITM2Q01629 132 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 SRSF5Q13243 272 aaKnown RBP4.26□□□□□ -1.73
USP48-202ENST00000374730 EBPQ15125 230 aaKnown RBP4.26□□□□□ -1.73
USP48-202ENST00000374730 CD226Q15762 336 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 NNATQ16517 81 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 TATDN3Q17R31 274 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 BTBD16Q32M84 506 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 TP53I3Q53FA7 332 aa4.26□□□□□ -1.73
USP48-202ENST00000374730 HSD17B12Q53GQ0 312 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms