RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 IGLON5A6NGN9 336 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 PRRT4C9JH25 899 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ADAP1O75689 374 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 NKX2-2O95096 273 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 F13BP05160 661 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 C8AP07357 584 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 LYL1P12980 280 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 MEF2DQ14814 521 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ZNF77Q15935 545 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 Q3ZCU0 254 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 MESTQ5EB52 335 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 FAM76BQ5HYJ3 339 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 FCRL6Q6DN72 434 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 FAHD2BQ6P2I3 314 aaPredicted RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 PRSS41Q7RTY9 318 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ADGRE4PQ86SQ3 457 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 GKN2Q86XP6 184 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 SAMD14Q8IZD0 417 aaPredicted RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 RCBTB1Q8NDN9 531 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 AQP3Q92482 292 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 SGK3Q96BR1 496 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 FAHD2AQ96GK7 314 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 MARS2Q96GW9 593 aaKnown RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 OR5B2Q96R09 309 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 CMKLR1Q99788 373 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 MESP1Q9BRJ9 268 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 C20orf24Q9BUV8 137 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 NUDT9Q9BW91 350 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 NRSN2Q9GZP1 204 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 LMAN2LQ9H0V9 348 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 PDE7BQ9NP56 450 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 INSL6Q9Y581 213 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 WIF1Q9Y5W5 379 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 COLEC10Q9Y6Z7 277 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 FANCMQ8IYD8 2048 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 DCDC2BA2VCK2 349 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 EIF1AYO14602 144 aaKnown RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 FOXS1O43638 330 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 YIF1AO95070 293 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 SLC34A2O95436 690 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ARG1P05089 322 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 INHAP05111 366 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 SMIM10L1P0DMW3 83 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 CD37P11049 281 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 IGFBP3P17936 291 aaPredicted RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 CMPK1P30085 196 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 HRH1P35367 487 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 P2RY2P41231 377 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 GLP1RP43220 463 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 EIF1AXP47813 144 aaKnown RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 LSSP48449 732 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 CX3CR1P49238 355 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 P2RY4P51582 365 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 PGDP52209 483 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 DVL1P1P54792 670 aaPredicted RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 CTXN1P60606 82 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 PSG6Q00889 435 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 EGR3Q06889 387 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 MFGE8Q08431 387 aaPredicted RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 SKP2Q13309 424 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ZNF239Q16600 458 aaKnown RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 ZNF260Q3ZCT1 412 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ADAM5Q6NVV9 412 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 PRSS54Q6PEW0 395 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 SLC35D2Q76EJ3 337 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 RNF44Q7L0R7 432 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 TRAPPC6BQ86SZ2 158 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 FAM24BQ8N5W8 94 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 OR5T3Q8NGG3 340 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 PHOSPHO2Q8TCD6 241 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 MARCH1Q8TCQ1 289 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ASB5Q8WWX0 329 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 GTF3AQ92664 365 aaKnown RBP6.1□□□□□ -1.43
VPS39-202ENST00000348544 NKD1Q969G9 470 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 SMIM10Q96HG1 83 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 CYYR1Q96J86 154 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 RHOVQ96L33 236 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ZNF558Q96NG5 402 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 FOXN4Q96NZ1 517 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 AQP10Q96PS8 301 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 SCRT1Q9BWW7 348 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ELOVL3Q9HB03 270 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 ZDHHC4Q9NPG8 344 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 RHBDD3Q9Y3P4 386 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 XIRP2A4UGR9 3374 aa6.1□□□□□ -1.43
VPS39-202ENST00000348544 K7EQS6 105 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 RAB27BO00194 218 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 LILRB3O75022 631 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 PLGP00747 810 aaPredicted RBP6.09□□□□□ -1.43
VPS39-202ENST00000348544 CD2P06729 351 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 NME1P15531 152 aaKnown RBP6.09□□□□□ -1.43
VPS39-202ENST00000348544 BTF3P20290 206 aaKnown RBP6.09□□□□□ -1.43
VPS39-202ENST00000348544 GSK3AP49840 483 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 SULT1A2P50226 295 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 ADPRHP54922 357 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 PRPS1P60891 318 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 MEP1BQ16820 701 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 ITPRIPL2Q3MIP1 535 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 AWAT2Q6E213 333 aa6.09□□□□□ -1.43
VPS39-202ENST00000348544 FBXO42Q6P3S6 717 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms