RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 OR2M7Q8NG81 312 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 DTD2Q96FN9 168 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 FCGR2CP31995 323 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 ELLP55199 621 aaPredicted RBP13.12□□□□□ -0.31
COL7A1-201ENST00000328333 MFSD4AQ8N468 514 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 BRI3BPQ8WY22 251 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 FAAP24Q9BTP7 215 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 TRAPPC4Q9Y296 219 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 ISL1P61371 349 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 LMNTD1Q8N9Z9 388 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 ATF6BQ99941 703 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 NMES1Q9C002 83 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 GSX1Q9H4S2 264 aaPredicted RBP13.12□□□□□ -0.31
COL7A1-201ENST00000328333 COL11A1P12107 1806 aaPredicted RBP13.12□□□□□ -0.31
COL7A1-201ENST00000328333 CACNA1EQ15878 2313 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 TERTO14746 1132 aaKnown RBP13.12□□□□□ -0.31
COL7A1-201ENST00000328333 WNT11O96014 354 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 NTSR1P30989 418 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 EXTL1Q92935 676 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 MRPL38Q96DV4 380 aaKnown RBP13.12□□□□□ -0.31
COL7A1-201ENST00000328333 SDK2Q58EX2 2172 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 HEXAP06865 529 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 ERVFC1-1P60608 527 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 TMEM182Q6ZP80 229 aaPredicted RBP13.12□□□□□ -0.31
COL7A1-201ENST00000328333 PDCD1LG2Q9BQ51 273 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 VDAC3Q9Y277 283 aa13.12□□□□□ -0.31
COL7A1-201ENST00000328333 GPR173Q9NS66 373 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 CXXC1Q9P0U4 656 aaPredicted RBP13.11□□□□□ -0.31
COL7A1-201ENST00000328333 AIFM1O95831 613 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 LGI1O95970 557 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 PIGAP37287 484 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 MOB3CQ70IA8 216 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 WDTC1Q8N5D0 677 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 EIF4E3Q8N5X7 224 aaKnown RBP13.11□□□□□ -0.31
COL7A1-201ENST00000328333 DTWD2Q8NBA8 298 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 BLNKQ8WV28 456 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 EGLN1Q9GZT9 426 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 CRYM-AS1A6NIL9 109 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 YIF1AO95070 293 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 ELNP15502 786 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 FFAR4Q5NUL3 377 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 TMEM64Q6YI46 380 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 EDARADDQ8WWZ3 215 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 ZNF583Q96ND8 569 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 TRAPPC1Q9Y5R8 145 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 PKDREJQ9NTG1 2253 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 IFITM5A6NNB3 132 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 KIR2DL3P43628 341 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 PHLDA2Q53GA4 152 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 ZNF628Q5EBL2 1059 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 NLGN4YQ8NFZ3 816 aaPredicted RBP13.11□□□□□ -0.31
COL7A1-201ENST00000328333 ATG101Q9BSB4 218 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 BOCQ9BWV1 1114 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 SPCS3P61009 180 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 LILRA2Q8N149 483 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 NTNG2Q96CW9 530 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 SEC11CQ9BY50 192 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 CLEC3BP05452 202 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 C6orf132Q5T0Z8 1188 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 L3MBTL4Q8NA19 623 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 RNF39Q9H2S5 420 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 NRAPQ86VF7 1730 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 SERINC4A6NH21 518 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 PHOX2AO14813 284 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 ABCD3P28288 659 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 LHFPL2Q6ZUX7 228 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 EXD3Q8N9H8 876 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 HGDQ93099 445 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 CHST8Q9H2A9 424 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 SSC5DA1L4H1 1573 aa13.11□□□□□ -0.31
COL7A1-201ENST00000328333 LOC102723971A0A1B0GUV8 181 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 GRASPQ7Z6J2 395 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 OR52R1Q8NGF1 315 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 TAAR9Q96RI9 348 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 CREBBPQ92793 2442 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 HMSDA8MTL9 139 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 FZD6O60353 706 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 GPR12P47775 334 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 PKIAP61925 76 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 ELFN2Q5R3F8 820 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 THEM4Q5T1C6 240 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 GLIPR1L1Q6UWM5 242 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 FA2HQ7L5A8 372 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 ZFP62Q8NB50 900 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 KCNK15Q9H427 330 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 BARX1Q9HBU1 254 aaPredicted RBP13.1□□□□□ -0.31
COL7A1-201ENST00000328333 DBX1A6NMT0 343 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 M0QZQ0 153 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 FABP4P15090 132 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 TCN2P20062 427 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 RNF175Q8N4F7 328 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 OR10P1Q8NGE3 313 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 IFI44Q8TCB0 444 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 OPALINQ96PE5 141 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 ZNF426Q9BUY5 554 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 COL6A6A6NMZ7 2263 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 FRS3O43559 492 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 TEAD1P28347 426 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 SDHAP31040 664 aa13.1□□□□□ -0.31
COL7A1-201ENST00000328333 RPS23P62266 143 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms