RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 YAP1P46937 504 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 LIPEQ05469 1076 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 SCRN3Q0VDG4 424 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 KIAA0087Q14695 138 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 DGUOKQ16854 277 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 VPS26BQ4G0F5 336 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 PLCXD3Q63HM9 321 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 SSX9Q7RTT3 188 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ASCL5Q7RTU5 278 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 C6orf120Q7Z4R8 191 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 CAMK2N1Q7Z7J9 78 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 MICU2Q8IYU8 434 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 TMEM61Q8N0U2 210 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ARIH2OSQ8N7S6 290 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 TPRX1Q8N7U7 411 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ACOT4Q8N9L9 421 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 MNS1Q8NEH6 495 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 B3GNT7Q8NFL0 401 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 OR51G1Q8NGK1 321 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 OR1N2Q8NGR9 330 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 PLPPR1Q8TBJ4 325 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 GPX8Q8TED1 209 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 KIFAP3Q92845 792 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 FGF14Q92915 247 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 KIAA1143Q96AT1 154 aaPredicted RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 PRRC1Q96M27 445 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF578Q96N58 590 aaPredicted RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF285Q96NJ3 590 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 GSDMAQ96QA5 445 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 TEKT3Q9BXF9 490 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 KRTAP4-4Q9BYR3 166 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 SRMSQ9H3Y6 488 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ELOVL6Q9H5J4 265 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 TDRD3Q9H7E2 651 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 MRPL47Q9HD33 250 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 CCL28Q9NRJ3 127 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 C20orf96Q9NUD7 363 aaPredicted RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 RAB26Q9ULW5 256 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 TP53TG5Q9Y2B4 290 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 FLNBO75369 2602 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 EYSQ5T1H1 3165 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 CPSF1Q10570 1443 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 SMG6Q86US8 1419 aaKnown RBP2.16□□□□□ -2.06
HMGB1-201ENST00000326004 ASTN1O14525 1302 aa2.16□□□□□ -2.06
HMGB1-201ENST00000326004 PPLO60437 1756 aa2.15□□□□□ -2.06
HMGB1-201ENST00000326004 LTN1O94822 1766 aa2.15□□□□□ -2.06
HMGB1-201ENST00000326004 MRC1P22897 1456 aa2.15□□□□□ -2.06
HMGB1-201ENST00000326004 ANKRD30AQ9BXX3 1397 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 A0A0G2JLM5 398 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 IGHV3-64DA0A0J9YX35 117 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 LINC00854A0A1B0GVQ3 168 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 GABRR3A8MPY1 467 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 H0YHG0 523 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 M0QX08 132 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 NEMFO60524 1076 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 TNFSF13O75888 250 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 OR7A10O76100 309 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 C1orf105O95561 183 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 PAHP00439 452 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 CSTAP01040 98 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 FGF1P05230 155 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 CRYGCP07315 174 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 PRKACAP17612 351 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 GTF2E2P29084 291 aaKnown RBP2.15□□□□□ -2.07
HMGB1-201ENST00000326004 BMI1P35226 326 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 HSD17B2P37059 387 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 VHLP40337 213 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 SLC26A3P40879 764 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 RPS10P46783 165 aaKnown RBP2.15□□□□□ -2.07
HMGB1-201ENST00000326004 UQCRFS1P47985 274 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 GSSP48637 474 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 LHX2P50458 406 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 RAB11AP62491 216 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 SARNPP82979 210 aaKnown RBP2.15□□□□□ -2.07
HMGB1-201ENST00000326004 PAX5Q02548 391 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 IRF8Q02556 426 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 ITIH4Q14624 930 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 RAB11BQ15907 218 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 NKAIN1Q4KMZ8 207 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 TMEM255AQ5JRV8 349 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 LY6G6FQ5SQ64 297 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 FRMPD2BQ6IN97 320 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 C1orf94Q6P1W5 598 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 Q6P435 159 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 TIFABQ6ZNK6 161 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 LRRC74BQ6ZQY2 392 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 Q6ZSR3 168 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 VN1R2Q8NFZ6 395 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 MARCH1Q8TCQ1 289 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 MCOLN3Q8TDD5 553 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 GPR151Q8TDV0 419 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 SGK3Q96BR1 496 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 ECSITQ9BQ95 431 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 SIKE1Q9BRV8 207 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 PELOQ9BRX2 385 aaKnown RBP2.15□□□□□ -2.07
HMGB1-201ENST00000326004 BLZF1Q9H2G9 400 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 RGCCQ9H4X1 137 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 XKR8Q9H6D3 395 aa2.15□□□□□ -2.07
HMGB1-201ENST00000326004 C8orf33Q9H7E9 229 aaPredicted RBP2.15□□□□□ -2.07
HMGB1-201ENST00000326004 LY9Q9HBG7 655 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms