RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 NECAP2Q9NVZ3 263 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 A0A0B4J203 849 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 TRAPPC2LH3BP13 241 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 B3GALT4O96024 378 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 DUSP1P28562 367 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 NKX2-1P43699 371 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 C5orf46Q6UWT4 87 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 SLC16A11Q8NCK7 471 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 OR52B4Q8NGK2 314 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 RASD2Q96D21 266 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 BSCL2Q96G97 398 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 MAP3K3Q99759 626 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 PIGQQ9BRB3 760 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 A6NCN8 305 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 ZNF727A8MUV8 499 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 GALR3O60755 368 aaPredicted RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 MAP2K6P52564 334 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 RANP62826 216 aaKnown RBP10.51□□□□□ -0.73
VPS39-201ENST00000318006 CDK5R1Q15078 307 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 TMEM64Q6YI46 380 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 LYG2Q86SG7 212 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 SLC38A6Q8IZM9 456 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 PFN4Q8NHR9 129 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 LHFPL5Q8TAF8 219 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 MS4A6EQ96DS6 147 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 TBC1D29Q9UFV1 150 aa10.51□□□□□ -0.73
VPS39-201ENST00000318006 SLC2A10O95528 541 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 SFTA3P0C7M3 94 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 RRASP10301 218 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 EPXP11678 715 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 PCMT1P22061 227 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 SSBP1Q04837 148 aaKnown RBP10.5□□□□□ -0.73
VPS39-201ENST00000318006 FABP9Q0Z7S8 132 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 OR2L13Q8N349 312 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ZNF610Q8N9Z0 462 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 NANOS1Q8WY41 292 aaKnown RBP10.5□□□□□ -0.73
VPS39-201ENST00000318006 PIGCQ92535 297 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 NKX3-1Q99801 234 aaPredicted RBP10.5□□□□□ -0.73
VPS39-201ENST00000318006 ABHD6Q9BV23 337 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ZNF586Q9NXT0 402 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 HAO2Q9NYQ3 351 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 LRP5LA4QPB2 252 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 HMGN4O00479 90 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 CTNSO60931 367 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 CTSLP07711 333 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ADRA2CP18825 462 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ALOX5APP20292 161 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ACKR3P25106 362 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 P2RX1P51575 399 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ZNF133P52736 654 aaPredicted RBP10.5□□□□□ -0.73
VPS39-201ENST00000318006 PCBP4P57723 403 aaKnown RBP10.5□□□□□ -0.73
VPS39-201ENST00000318006 SRYQ05066 204 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 VAMP3Q15836 100 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 PHLDA2Q53GA4 152 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 NPSR1Q6W5P4 371 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 OR4C16Q8NGL9 310 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 OR13C5Q8NGS8 318 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 OR6S1Q8NH40 331 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 SLC37A2Q8TED4 501 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 Q96M85 177 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 DCBLD2Q96PD2 775 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ZNF251Q9BRH9 671 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 TRAV1-2A0A0B4J238 106 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 TLCD2A6NGC4 264 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 MCRIP1C9JLW8 97 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 CHRM4P08173 479 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 DOC2BQ14184 412 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ENDOGQ14249 297 aaKnown RBP10.5□□□□□ -0.73
VPS39-201ENST00000318006 ST3GAL2Q16842 350 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 C11orf87Q6NUJ2 197 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 OR10D4PQ8NGN7 298 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 OR5M1Q8NGP8 315 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 AKR1E2Q96JD6 320 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 SLC6A18Q96N87 628 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 MED9Q9NWA0 146 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 ZNF230Q9UIE0 474 aaPredicted RBP10.5□□□□□ -0.73
VPS39-201ENST00000318006 PCDHB10Q9UN67 800 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 TRAV36DV7A0A075B6V5 113 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 E5RGE8 158 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 CLN5O75503 358 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 CD63P08962 238 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 TBPP20226 339 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 COMMD1Q8N668 190 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 OR5AP2Q8NGF4 316 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 SCMH1Q96GD3 660 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 KLK11Q9UBX7 282 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 NSG2Q9Y328 171 aa10.5□□□□□ -0.73
VPS39-201ENST00000318006 CXorf51AA0A1B0GTR3 108 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 POM121BA6NF01 834 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 SCRG1O75711 98 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 IL2RGP31785 369 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 LRRTM1Q86UE6 522 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 TMEM123Q8N131 208 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 UBAC2Q8NBM4 344 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 GCDHQ92947 438 aaPredicted RBP10.49□□□□□ -0.73
VPS39-201ENST00000318006 C2orf50Q96LR7 162 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 FGF21Q9NSA1 209 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 GDF2Q9UK05 429 aaPredicted RBP10.49□□□□□ -0.73
VPS39-201ENST00000318006 DOK2O60496 412 aa10.49□□□□□ -0.73
VPS39-201ENST00000318006 CER1O95813 267 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms