RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 XYLT1Q86Y38 959 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 OR2V1Q8NHB1 315 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SLC38A5Q8WUX1 472 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SERINC2Q96SA4 455 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 ALOXE3Q9BYJ1 711 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 PGAP2Q9UHJ9 254 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 SPCS1Q9Y6A9 102 aa7.03□□□□□ -1.28
LIMCH1-201ENST00000313860 CDHR4A6H8M9 788 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 CTDSPLO15194 276 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 HYAL3O43820 417 aaPredicted RBP7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 GDF9O60383 454 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 SMIM13P0DJ93 91 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 LHX1P48742 406 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 RPS16P62249 146 aaKnown RBP7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 ACSF3Q4G176 576 aaPredicted RBP7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 VAX1Q5SQQ9 334 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 RNF113BQ8IZP6 322 aaKnown RBP7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 DOK4Q8TEW6 326 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 TMED6Q8WW62 240 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 C11orf54Q9H0W9 315 aaPredicted RBP7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 GSN-AS1Q9NRJ2 163 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 KIAA1456Q9P272 454 aa7.02□□□□□ -1.28
LIMCH1-201ENST00000313860 CRYBG1Q9Y4K1 1723 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 MAP1LC3B2A6NCE7 125 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 RBP4P02753 201 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 CDK6Q00534 326 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ERFEQ4G0M1 354 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 PKDCCQ504Y2 493 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 NKAIN4Q8IVV8 208 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ARRDC4Q8NCT1 418 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 LKAAEAR1Q8TD35 194 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 NUDT8Q8WV74 236 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 NXPE3Q969Y0 559 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC25A46Q96AG3 418 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 HCAR1Q9BXC0 346 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 MAP1LC3BQ9GZQ8 125 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 PHPT1Q9NRX4 125 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 CTNNBIP1Q9NSA3 81 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 LGALS13Q9UHV8 139 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 HSF4Q9ULV5 492 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 H0Y980 276 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 DOK2O60496 412 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF253O75346 499 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 GJB3O75712 270 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ATP5LO75964 103 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 MGMTP16455 207 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 SOX10P56693 466 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 NCAPD2Q15021 1401 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 PARS2Q7L3T8 475 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 MRPL43Q8N983 215 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 CD200R1Q8TD46 325 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ISOC2Q96AB3 205 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 EEF1AKMT3Q96AZ1 226 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 PLEKHF2Q9H8W4 249 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 DEPDC5O75140 1603 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 QRICH2Q9H0J4 1663 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 CXorf65A6NEN9 183 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 M0QYG6 137 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 LAMP1P11279 417 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 PBX3P40426 434 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC35B1P78383 322 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 C9orf135Q5VTT2 229 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 OR5AN1Q8NGI8 311 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ACO2Q99798 780 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 NRIP3Q9NQ35 241 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 DCDC2CA8MYV0 355 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 GABRPO00591 440 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 LATO43561 262 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF354AO60765 605 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF137PP52743 207 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 MRPL58Q14197 206 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 ZNF774Q6NX45 483 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 D2HGDHQ8N465 521 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 OR51H1Q8NH63 302 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 SSBP4Q9BWG4 385 aaPredicted RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 SLC17A4Q9Y2C5 497 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 CFAP20Q9Y6A4 193 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 CD163L1Q9NR16 1453 aa7.02□□□□□ -1.29
LIMCH1-201ENST00000313860 TET3O43151 1660 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 SEMG1P04279 462 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 CFIP05156 583 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ANKRD34CP0C6C1 535 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 GLRXP35754 106 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 CIRBPQ14011 172 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 SMAD2Q15796 467 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ZC3H12AQ5D1E8 599 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 C9orf153Q5TBE3 101 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 FIGLAQ6QHK4 219 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ZPBP2Q6X784 338 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NUFIP2Q7Z417 695 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 MAP1LC3AQ9H492 121 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 POLMQ9NP87 494 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 DECR2Q9NUI1 292 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 RASD1Q9Y272 281 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 RCL1Q9Y2P8 373 aaKnown RBP7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 STARD10Q9Y365 291 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 ZFYVE9O95405 1425 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 NPATQ14207 1427 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 S1PR2O95136 353 aa7.01□□□□□ -1.29
LIMCH1-201ENST00000313860 HOXC6P09630 235 aa7.01□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms