RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 TANC2Q9HCD6 1990 aa13.9□□□□□ -0.18
LSM1-201ENST00000311351 WNT9BO14905 357 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 SPRY3O43610 288 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 CCNB2O95067 398 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 DBHP09172 617 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 NOS3P29474 1203 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 CRABP1P29762 137 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 ZNF81P51508 661 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 HMGA2P52926 109 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 KCNMB1Q16558 191 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 CORO6Q6QEF8 472 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 AQP11Q8NBQ7 271 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 OR8D4Q8NGM9 314 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 ASB9Q96DX5 294 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 THTPAQ9BU02 230 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 RACGAP1Q9H0H5 632 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 ELOVL3Q9HB03 270 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 GRIP1Q9Y3R0 1128 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 LHFPL6Q9Y693 200 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 CACNG2Q9Y698 323 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 U3KQV3 271 aa13.89□□□□□ -0.19
LSM1-201ENST00000311351 COL6A5A8TX70 2615 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 SVEP1Q4LDE5 3571 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 OR6C68A6NDL8 312 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 OR6C6A6NF89 314 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 TPD52L2O43399 206 aaKnown RBP13.88□□□□□ -0.19
LSM1-201ENST00000311351 PPIHO43447 177 aaKnown RBP13.88□□□□□ -0.19
LSM1-201ENST00000311351 UBOX5O94941 541 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 TGFAP01135 160 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 GASTP01350 101 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 IGHV1-46P01743 117 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 MT-ND5P03915 603 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 ARHGDIAP52565 204 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 MRPS11P82912 194 aaKnown RBP13.88□□□□□ -0.19
LSM1-201ENST00000311351 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.88□□□□□ -0.19
LSM1-201ENST00000311351 HNRNPA0Q13151 305 aaKnown RBP13.88□□□□□ -0.19
LSM1-201ENST00000311351 MOGQ16653 247 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 PCGF3Q3KNV8 242 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 FAM98BQ52LJ0 330 aaKnown RBP13.88□□□□□ -0.19
LSM1-201ENST00000311351 OR2T5Q6IEZ7 315 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 USP51Q70EK9 711 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 TRPM8Q7Z2W7 1104 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 LINC00346Q8IVM7 164 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 SLC26A10Q8NG04 563 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 OR52L1Q8NGH7 329 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 OR52E2Q8NGJ4 325 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 OR2T29Q8NH02 315 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 OR1F12Q8NHA8 337 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 CLDND2Q8NHS1 167 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 TRIM15Q9C019 465 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 TMEM160Q9NX00 188 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 NKIRAS2Q9NYR9 191 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 CDC42EP3Q9UKI2 254 aa13.88□□□□□ -0.19
LSM1-201ENST00000311351 SAMHD1Q9Y3Z3 626 aaKnown RBP13.88□□□□□ -0.19
LSM1-201ENST00000311351 MXRA5Q9NR99 2828 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 PLSCR5A0PG75 271 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 H3BSA7 217 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 BHLHE40O14503 412 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 ACOT8O14734 319 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 TIMM8AO60220 97 aaPredicted RBP13.87□□□□□ -0.19
LSM1-201ENST00000311351 SOX14O95416 240 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 TFP02787 698 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 ERFP50548 548 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 PSG7Q13046 419 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 SPRNQ5BIV9 151 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 AVPI1Q5T686 147 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 PGM2L1Q6PCE3 622 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 ARL9Q6T311 187 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 ZBTB46Q86UZ6 589 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 CYB561A3Q8NBI2 242 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 NPEPL1Q8NDH3 523 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 HPS1Q92902 700 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 LRGUKQ96M69 825 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 BEX2Q9BXY8 128 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 SHARPINQ9H0F6 387 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 C1orf21Q9H246 121 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 REEP1Q9H902 201 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 SAP30LQ9HAJ7 183 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 MSL2Q9HCI7 577 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 DECR2Q9NUI1 292 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 TBC1D23Q9NUY8 699 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 TBCCD1Q9NVR7 557 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 STARD10Q9Y365 291 aa13.87□□□□□ -0.19
LSM1-201ENST00000311351 FBN1P35555 2871 aaKnown RBP13.86□□□□□ -0.19
LSM1-201ENST00000311351 IGHV1-69-2A0A0G2JMI3 117 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 IDH3BO43837 385 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 FAM157CP0CG43 387 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 GSTM3P21266 225 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 PYCR1P32322 319 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 CRYBB2P43320 205 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 CDH15P55291 814 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 HIST1H3AP68431 136 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 TEKQ02763 1124 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 FAM120AOSQ5T036 256 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 HIST2H3PS2Q5TEC6 136 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 SLC18B1Q6NT16 456 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 RPL13AP3Q6NVV1 102 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 LYPD4Q6UWN0 246 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 CFAP77Q6ZQR2 320 aa13.86□□□□□ -0.19
LSM1-201ENST00000311351 RASSF6Q6ZTQ3 369 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms