RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 MRPL41Q8IXM3 137 aaKnown RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 OR56B2PQ8NGI1 322 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 PARP12Q9H0J9 701 aaKnown RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 SLCO1C1Q9NYB5 712 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 OGG1O15527 345 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 ZNF354AO60765 605 aaPredicted RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 CBX7O95931 251 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 OR2B8PP59922 312 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 PJVKQ0ZLH3 352 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 DHRS2Q13268 280 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 KLF9Q13886 244 aaPredicted RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 CCDC74AQ96AQ1 378 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 RBMXL1Q96E39 390 aaKnown RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 OPN4Q9UHM6 478 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 ZNF133P52736 654 aaPredicted RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 ZNF136P52737 540 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 SLC25A1P53007 311 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 ZDHHC22Q8N966 263 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 SGCZQ96LD1 299 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 SLC6A18Q96N87 628 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 BANF2Q9H503 90 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 C8orf33Q9H7E9 229 aaPredicted RBP17.55■□□□□ 0.4
USP48-201ENST00000308271 KCNIP1Q9NZI2 227 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 RARRES3Q9UL19 164 aa17.55■□□□□ 0.4
USP48-201ENST00000308271 NME2P1O60361 137 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 IL33O95760 270 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 OLFM2O95897 454 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 TANGO2Q6ICL3 276 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 WDR5BQ86VZ2 330 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 DTWD2Q8NBA8 298 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 OR1E3Q8WZA6 343 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 ZNFX1Q9P2E3 1918 aaKnown RBP17.54■□□□□ 0.4
USP48-201ENST00000308271 A0A087WUJ7 227 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 CD37P11049 281 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 DRD1P21728 446 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 MMP26Q9NRE1 261 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 SRPK3Q9UPE1 567 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 SYNGR4O95473 234 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 AVPR2P30518 371 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 ZNF85Q03923 595 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 C17orf67Q0P5P2 114 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 NPSR1Q6W5P4 371 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 H1FNTQ75WM6 255 aaPredicted RBP17.54■□□□□ 0.4
USP48-201ENST00000308271 TRILQ7L0X0 811 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 LRRTM1Q86UE6 522 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 OR4D9Q8NGE8 314 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 NTMQ9P121 344 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 FBXO4Q9UKT5 387 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 R4GMQ9 66 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 TCRBV16S1A1N1A0A5B0 115 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 TO15178 435 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 DHPSP49366 369 aaPredicted RBP17.54■□□□□ 0.4
USP48-201ENST00000308271 TMEM128Q5BJH2 165 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 PWWP2BQ6NUJ5 590 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 RBMS3Q6XE24 437 aaKnown RBP17.54■□□□□ 0.4
USP48-201ENST00000308271 ZNF275Q9NSD4 429 aaPredicted RBP17.54■□□□□ 0.4
USP48-201ENST00000308271 ALKBH4Q9NXW9 302 aa17.54■□□□□ 0.4
USP48-201ENST00000308271 LOC102725191A0A1B0GVB3 256 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 PRSS37A4D1T9 235 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 RNASEK-C17orf49H0YIS7 233 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 KCNIP4Q6PIL6 250 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 PHF1O43189 567 aaPredicted RBP17.53■□□□□ 0.4
USP48-201ENST00000308271 RIN1Q13671 783 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 MARCH3Q86UD3 253 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 OR52N5Q8NH56 324 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 NT5CQ8TCD5 201 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 NECAP2Q9NVZ3 263 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 SLC5A6Q9Y289 635 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 ARID1AO14497 2285 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 OR7C1O76099 320 aaPredicted RBP17.53■□□□□ 0.4
USP48-201ENST00000308271 DBHP09172 617 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 MFAP5Q13361 173 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 MRPL49Q13405 166 aaKnown RBP17.53■□□□□ 0.4
USP48-201ENST00000308271 TUSC1Q2TAM9 212 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 OR1J1Q8NGS3 322 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 OR2G3Q8NGZ4 309 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 MR1Q95460 341 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 OR8B4Q96RC9 309 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 S1PR5Q9H228 398 aa17.53■□□□□ 0.4
USP48-201ENST00000308271 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 TNFRSF10CO14798 259 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 TNFSF12O43508 249 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 GCM2O75603 506 aaPredicted RBP17.52■□□□□ 0.4
USP48-201ENST00000308271 CTAG2O75638 210 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 HLA-DQB1P01920 261 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 OPN1LWP04000 364 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 GSTP1P09211 210 aaKnown RBP17.52■□□□□ 0.4
USP48-201ENST00000308271 HOXB9P17482 250 aaPredicted RBP17.52■□□□□ 0.4
USP48-201ENST00000308271 MRPS34P82930 218 aaKnown RBP17.52■□□□□ 0.4
USP48-201ENST00000308271 CA13Q8N1Q1 262 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 OR51A4Q8NGJ6 313 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 SDHCQ99643 169 aaPredicted RBP17.52■□□□□ 0.4
USP48-201ENST00000308271 CCDC163A0A0D9SF12 145 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 FOLR1P15328 257 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 MEOX2P50222 304 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 PLGLB1Q02325 96 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 CDKN3Q16667 212 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 ULBP2Q9BZM5 246 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 MOB1AQ9H8S9 216 aa17.52■□□□□ 0.4
USP48-201ENST00000308271 DSPPQ9NZW4 1301 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms