RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CFPP27918 469 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 DHPSP49366 369 aaPredicted RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 SULT1A1P50225 295 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 RPS15AP62244 130 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 RAC1P63000 192 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 HIST1H3AP68431 136 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 EIF3IQ13347 325 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 NHLRC3Q5JS37 347 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 KMT5CQ86Y97 462 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 NKAIN3Q8N8D7 197 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OR4D10Q8NGI6 311 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OR2G3Q8NGZ4 309 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 NEIL2Q969S2 332 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 RPUSD4Q96CM3 377 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 NUS1Q96E22 293 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 PARD6GQ9BYG4 376 aaPredicted RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 WWTR1Q9GZV5 400 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 METTL7AQ9H8H3 244 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 A4GNTQ9UNA3 340 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ENTPD2Q9Y5L3 495 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CITO14578 2027 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 TMEM212A6NML5 194 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 HIDE1A8MVS5 230 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 MCRIP1C9JLW8 97 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 GALTP07902 379 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 RAB13P51153 203 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 RBM11P57052 281 aaKnown RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 DUSP8Q13202 625 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 ATP6V1FQ16864 119 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 LAIR1Q6GTX8 287 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 LAMTOR1Q6IAA8 161 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 LRRC25Q8N386 305 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 BPIFB2Q8N4F0 458 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 LFNGQ8NES3 379 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 OR1J2Q8NGS2 313 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 FAAP24Q9BTP7 215 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 PECRQ9BY49 303 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 LANCL2Q9NS86 450 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 WBP1LQ9NX94 342 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 OR6C3Q9NZP0 311 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 HMGN4O00479 90 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 SIAH2O43255 324 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 SYT7O43581 403 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 PAPLNO95428 1278 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 HPNP05981 417 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 HNRNPA1P09651 372 aaKnown RBP eCLIP5.86□□□□□ -1.47
VPS35-201ENST00000299138 SLC25A6P12236 298 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 TNFSF4P23510 183 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 UBE2G1P62253 170 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 ARF6P62330 175 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 MALLQ13021 153 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 MRPL49Q13405 166 aaKnown RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 GGTLC2Q14390 218 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 TMEM52BQ4KMG9 183 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 DTD2Q96FN9 168 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 SLC38A3Q99624 504 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 NMES1Q9C002 83 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 OR2AG1Q9H205 316 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 INSL5Q9Y5Q6 135 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 TRAPPC1Q9Y5R8 145 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 SLC22A7Q9Y694 548 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 G3V3Y1 287 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 NDUFA2O43678 99 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 HSBP1O75506 76 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 RABIFP47224 123 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 KLF9Q13886 244 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 DHRS7BQ6IAN0 325 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 ACOT7LQ6ZUV0 252 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 TMEM37Q8WXS4 190 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 ALG14Q96F25 216 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 FAM71F1Q96KD3 344 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 SRMSQ9H3Y6 488 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 ZNF355PQ9NSJ1 428 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 SLC25A1P53007 311 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 RAB1AP62820 205 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 RELQ04864 619 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 LMAN2Q12907 356 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 TMEM244Q5VVB8 128 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 FCRL6Q6DN72 434 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 RHBDD2Q6NTF9 364 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 TMEM71Q6P5X7 295 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 ANKRD16Q6P6B7 361 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 PET117Q6UWS5 81 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 ZNF704Q6ZNC4 412 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 ZNF383Q8NA42 475 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 MORN4Q8NDC4 146 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 OR2AE1Q8NHA4 323 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 ANKRD9Q96BM1 317 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 TM4SF18Q96CE8 201 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 IGSF21Q96ID5 467 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 GPX7Q96SL4 187 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 NTMQ9P121 344 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 MYO18AQ92614 2054 aaKnown RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 ZNF727A8MUV8 499 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 RNASE1P07998 156 aaKnown RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 DBHP09172 617 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 TMIGD3P0DMS9 266 aaPredicted RBP5.86□□□□□ -1.47
VPS35-201ENST00000299138 AADACP22760 399 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 GCSHP23434 173 aa5.86□□□□□ -1.47
VPS35-201ENST00000299138 BMI1P35226 326 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms