RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 SEZ6L2Q6UXD5 910 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 MARCH3Q86UD3 253 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 GALNT16Q8N428 558 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 PLPP5Q8NEB5 264 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 TERB2Q8NHR7 220 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 MALSU1Q96EH3 234 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 C1orf123Q9NWV4 160 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 MRPS28Q9Y2Q9 187 aaKnown RBP13.96□□□□□ -0.17
SHH-201ENST00000297261 TSC2P49815 1807 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 ZNF93P35789 620 aaPredicted RBP13.96□□□□□ -0.17
SHH-201ENST00000297261 RAB4BP61018 213 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 UEVLDQ8IX04 471 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 ZNF561Q8N587 486 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 OR4D10Q8NGI6 311 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 OR1S1Q8NH92 325 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 RSC1A1Q92681 617 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 BORCS8Q96FH0 119 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 C20orf141Q9NUB4 165 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 FAM96BQ9Y3D0 163 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 FAM221BA6H8Z2 402 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 SDCBPO00560 298 aaPredicted RBP13.96□□□□□ -0.17
SHH-201ENST00000297261 SLC2A1P11166 492 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 NAGAP17050 411 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 SLC6A8P48029 635 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 SHISA6Q6ZSJ9 500 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 FJX1Q86VR8 437 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 SUMF1Q8NBK3 374 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 OR4S1Q8NGB4 309 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 OR4D11Q8NGI4 311 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 ZNF75AQ96N20 296 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 SLC22A11Q9NSA0 550 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 LRIT1Q9P2V4 623 aa13.96□□□□□ -0.17
SHH-201ENST00000297261 SERPINE2P07093 398 aa13.96□□□□□ -0.18
SHH-201ENST00000297261 LINC00271P0C7V0 271 aa13.96□□□□□ -0.18
SHH-201ENST00000297261 ALOX5APP20292 161 aa13.96□□□□□ -0.18
SHH-201ENST00000297261 Q5BKY6 102 aa13.96□□□□□ -0.18
SHH-201ENST00000297261 HSD17B13Q7Z5P4 300 aaPredicted RBP13.96□□□□□ -0.18
SHH-201ENST00000297261 TMEM217Q8N7C4 229 aa13.96□□□□□ -0.18
SHH-201ENST00000297261 RHOFQ9HBH0 211 aa13.96□□□□□ -0.18
SHH-201ENST00000297261 RAB22AQ9UL26 194 aa13.96□□□□□ -0.18
SHH-201ENST00000297261 A0A087WV62 115 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 A6NIZ1 184 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 IDSB3KWA1 339 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 TRAPPC6AO75865 159 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 LCATP04180 440 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 RAP1BP61224 184 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 RPS18P62269 152 aaKnown RBP13.95□□□□□ -0.18
SHH-201ENST00000297261 RAP1AP62834 184 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 SERTAD2Q14140 314 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 NAXDQ8IW45 347 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 AMER3Q8N944 861 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 MARCH1Q8TCQ1 289 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 PNPLA2Q96AD5 504 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 DCBLD2Q96PD2 775 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 DUSP22Q9NRW4 184 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 OR6C76A6NM76 312 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 AQP8O94778 261 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 SCGB1D1O95968 90 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 THBS1P07996 1170 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 CD27P26842 260 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 TAS2R46P59540 309 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 PLA1AQ53H76 456 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 ACTBL2Q562R1 376 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 C19orf47Q8N9M1 422 aaKnown RBP13.95□□□□□ -0.18
SHH-201ENST00000297261 OR9K2Q8NGE7 335 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 OR56B1Q8NGI3 324 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 AKR1E2Q96JD6 320 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 MAP3K3Q99759 626 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 PRKNO60260 465 aaPredicted RBP13.95□□□□□ -0.18
SHH-201ENST00000297261 ZFPL1O95159 310 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 GLULP15104 373 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 ZNF84P51523 738 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 DUSP8Q13202 625 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 MANEAQ5SRI9 462 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 C11orf87Q6NUJ2 197 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 SLC22A24Q8N4F4 322 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 SMRP1Q8NCR6 262 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 OR51Q1Q8NH59 317 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 KCNG3Q8TAE7 436 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 FBLIM1Q8WUP2 373 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 DIO2Q92813 273 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 PLEK2Q9NYT0 353 aa13.95□□□□□ -0.18
SHH-201ENST00000297261 CDC42EP2O14613 210 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 BCAT2O15382 392 aaPredicted RBP13.94□□□□□ -0.18
SHH-201ENST00000297261 XRCC3O43542 346 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 CTRB1P17538 263 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 ARHGAP11BQ3KRB8 267 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 CTRB2Q6GPI1 263 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 CPEB2Q7Z5Q1 589 aaKnown RBP13.94□□□□□ -0.18
SHH-201ENST00000297261 IGF2P01344 180 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 FABP9Q0Z7S8 132 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 C4orf17Q53FE4 359 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 FAM57BQ71RH2 274 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 DND1Q8IYX4 353 aaKnown RBP13.94□□□□□ -0.18
SHH-201ENST00000297261 OR2G2Q8NGZ5 317 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 BMFQ96LC9 184 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 GPR137Q96N19 417 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 SUSD2Q9UGT4 822 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 NLRC5Q86WI3 1866 aa13.94□□□□□ -0.18
SHH-201ENST00000297261 CYTIPO60759 359 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms