RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 RNF133Q8WVZ7 376 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 SLAMF6Q96DU3 332 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 WDR89Q96FK6 387 aaPredicted RBP17.88■□□□□ 0.45
VPS53-201ENST00000291074 EMC3Q9P0I2 261 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 MGAT4CQ9UBM8 478 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 SCP2D1Q9UJQ7 156 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 RPH3AQ9Y2J0 694 aaPredicted RBP17.88■□□□□ 0.45
VPS53-201ENST00000291074 MSX1P28360 303 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 MFAP5Q13361 173 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 SLC25A53Q5H9E4 307 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 NHLRC1Q6VVB1 395 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 ZNF782Q6ZMW2 699 aaPredicted RBP17.88■□□□□ 0.45
VPS53-201ENST00000291074 ZNF767PQ75MW2 155 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 OR10H5Q8NGA6 315 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 OR10S1Q8NGN2 331 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 SDHAF3Q9NRP4 125 aa17.88■□□□□ 0.45
VPS53-201ENST00000291074 C19orf25Q9UFG5 118 aaPredicted RBP17.88■□□□□ 0.45
VPS53-201ENST00000291074 ELF5Q9UKW6 265 aaPredicted RBP17.88■□□□□ 0.45
VPS53-201ENST00000291074 A0A1W2PNV4 684 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 TTLL8A6PVC2 850 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 ONECUT2O95948 504 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 VSIG10L2P0DP72 767 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 PRSS3P35030 304 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 ZNF627Q7L945 461 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 WDSUB1Q8N9V3 476 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 GINS4Q9BRT9 223 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 ZMAT3Q9HA38 289 aaKnown RBP17.87■□□□□ 0.45
VPS53-201ENST00000291074 KLHL13Q9P2N7 655 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 EIF3KQ9UBQ5 218 aaKnown RBP17.87■□□□□ 0.45
VPS53-201ENST00000291074 SDK2Q58EX2 2172 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 IGLV3-32A0A0A0MS00 114 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 TEX51A0A1B0GUA7 166 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 DKK1O94907 266 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 CDAP32320 146 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 P2RY4P51582 365 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 PER3P56645 1201 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 C3orf33Q6P1S2 294 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 UEVLDQ8IX04 471 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 MRPL13Q9BYD1 178 aaKnown RBP17.87■□□□□ 0.45
VPS53-201ENST00000291074 SLC26A1Q9H2B4 701 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 FAM206AQ9NX38 181 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 B3GALT1Q9Y5Z6 326 aa17.87■□□□□ 0.45
VPS53-201ENST00000291074 CD3DP04234 171 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 ISG15P05161 165 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 CSF1P09603 554 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 ACSM4P0C7M7 580 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 ZNF81P51508 661 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 CFAP77Q6ZQR2 320 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 CDH24Q86UP0 819 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 MEIOBQ8N635 442 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 OR4D6Q8NGJ1 314 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 OR51S1Q8NGJ8 323 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 NAT6Q93015 286 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 RBP7Q96R05 134 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 HEXA-AS1Q9H8Q6 139 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 SEC61A2Q9H9S3 476 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 CYB5R1Q9UHQ9 305 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 TPPPO94811 219 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 CLRN1P58418 232 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 PCOLCEQ15113 449 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 MOGAT2Q3SYC2 334 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 OR6M1Q8NGM8 313 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 FGGYQ96C11 551 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 CITED4Q96RK1 184 aa17.86■□□□□ 0.45
VPS53-201ENST00000291074 UTP23Q9BRU9 249 aaKnown RBP17.86■□□□□ 0.45
VPS53-201ENST00000291074 TTRP02766 147 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 HRGP04196 525 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 RLN1P04808 185 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 FAUP35544 74 aaKnown RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 ZBTB37Q5TC79 503 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 ZNF626Q68DY1 528 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 ZNF704Q6ZNC4 412 aaPredicted RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 OR4K17Q8NGC6 315 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 IRF2BPLQ9H1B7 796 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 FANCFQ9NPI8 374 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 PTTG3PQ9NZH4 202 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 TRAF3IP2O43734 574 aaPredicted RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 CREBL2O60519 120 aaPredicted RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 TPOP07202 933 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 GNG2P59768 71 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 UBE2MP61081 183 aaKnown RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 RBMS2Q15434 407 aaKnown RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 RFPL4BQ6ZWI9 263 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 ELP5Q8TE02 316 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 EDAQ92838 391 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 SLC17A5Q9NRA2 495 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 PIPOXQ9P0Z9 390 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 CHCHD2Q9Y6H1 151 aaPredicted RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 UBCP0CG48 685 aaKnown RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 PGA4P0DJD7 388 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 PGA3P0DJD8 388 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 CCL4P13236 92 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 LAP3P28838 519 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 MMP16P51512 607 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 TMEM176BQ3YBM2 270 aaPredicted RBP17.85■□□□□ 0.45
VPS53-201ENST00000291074 TMEM244Q5VVB8 128 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 DEGS2Q6QHC5 323 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 ADGRE4PQ86SQ3 457 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 NOXO1Q8NFA2 376 aa17.85■□□□□ 0.45
VPS53-201ENST00000291074 GPX8Q8TED1 209 aa17.85■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms