RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 TMED7Q9Y3B3 224 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 LRP12Q9Y561 859 aa11.38□□□□□ -0.59
LIG1-201ENST00000263274 A0A1B0GW55 424 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 MFSD2BA6NFX1 497 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 D6RAR5 112 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 H0YIG0 161 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 STMND1H3BQB6 276 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 CD1AP06126 327 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 HOXC4P09017 264 aaPredicted RBP11.37□□□□□ -0.59
LIG1-201ENST00000263274 H2BFMP0C1H6 154 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DUX4L2P0CJ85 424 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DUX4L3P0CJ86 424 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DUX4L4P0CJ87 422 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DUX4L5P0CJ88 424 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DUX4L6P0CJ89 424 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DUX4L7P0CJ90 424 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 SLC2A1P11166 492 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 PPICP45877 212 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 RPL27P61353 136 aaKnown RBP11.37□□□□□ -0.59
LIG1-201ENST00000263274 EGR3Q06889 387 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 HYAL1Q12794 435 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 OR7A5Q15622 319 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 SLC22A6Q4U2R8 563 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 CDH26Q8IXH8 852 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 SEH1LQ96EE3 360 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 TCTN2Q96GX1 697 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 LRRC61Q9BV99 259 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 NUDT9Q9BW91 350 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 COPS7AQ9UBW8 275 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DUX4Q9UBX2 424 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 HHLA2Q9UM44 414 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 PCNX3Q9H6A9 2034 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 TRAV36DV7A0A075B6V5 113 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 SHISA8B8ZZ34 492 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 KRBOX1C9JBD0 128 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 NPIPA5E9PKD4 350 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 IL33O95760 270 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DLSTP36957 453 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 SLC37A1P57057 533 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 IL13RA1P78552 427 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 GLO1Q04760 184 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 LRRC75AQ8NAA5 344 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 PXT1Q8NFP0 134 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 OR10H5Q8NGA6 315 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 SHARPINQ9H0F6 387 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 NPIPA1Q9UND3 350 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 LOC107986453A0A1B0GWG9 222 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 RHPN2P1A8MT19 583 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 POU2F2P09086 479 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 IL11P20809 199 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 INSM1Q01101 510 aaPredicted RBP11.37□□□□□ -0.59
LIG1-201ENST00000263274 PMPCAQ10713 525 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 DHRS2Q13268 280 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.37□□□□□ -0.59
LIG1-201ENST00000263274 COX15Q7KZN9 410 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 CLRN3Q8NCR9 226 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 ASB5Q8WWX0 329 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 GPX7Q96SL4 187 aaPredicted RBP11.37□□□□□ -0.59
LIG1-201ENST00000263274 SELENOIQ9C0D9 397 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 LDAHQ9H6V9 325 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 CUTCQ9NTM9 273 aa11.37□□□□□ -0.59
LIG1-201ENST00000263274 COLQQ9Y215 455 aaPredicted RBP11.37□□□□□ -0.59
LIG1-201ENST00000263274 FAM221BA6H8Z2 402 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 METTL21EPA6NDL7 271 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 IGHV4-34P06331 123 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 POU3F1Q03052 451 aaPredicted RBP11.36□□□□□ -0.59
LIG1-201ENST00000263274 CARD17Q5XLA6 110 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 RAB12Q6IQ22 244 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 SLC29A4Q7RTT9 530 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 GALNTL5Q7Z4T8 443 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 TRAPPC6BQ86SZ2 158 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 CLEC1AQ8NC01 280 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 OR13C9Q8NGT0 318 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 THAP6Q8TBB0 222 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 REG4Q9BYZ8 158 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 FBRSQ9HAH7 460 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 OR2S2Q9NQN1 319 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 ASF1BQ9NVP2 202 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 MRPL22Q9NWU5 206 aaKnown RBP11.36□□□□□ -0.59
LIG1-201ENST00000263274 EPHA6Q9UF33 1036 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 SDK2Q58EX2 2172 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 TRBV5-7A0A0A0MS05 114 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 PRSS47A8MTI9 375 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 PHYHO14832 338 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 C1orf140Q5VVS0 124 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 EXD3Q8N9H8 876 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 INO80EQ8NBZ0 244 aaPredicted RBP11.36□□□□□ -0.59
LIG1-201ENST00000263274 PPP1R1CQ8WVI7 109 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 TMEM41AQ96HV5 264 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 SLC46A1Q96NT5 459 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 HS3ST3A1Q9Y663 406 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 EML5Q05BV3 1969 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 LOC101059948A0A1B0GTJ6 334 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 DISC1C4P0D8 188 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 F8W036 122 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 PMS2P2O95744 297 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 ZNF806P0C7X5 589 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 PI3P19957 117 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 ATP1B3P54709 279 aa11.36□□□□□ -0.59
LIG1-201ENST00000263274 FLI1Q01543 452 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms