RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 LIME1Q9H400 295 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 PLEKHF2Q9H8W4 249 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 MARCH7Q9H992 704 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 C8orf4Q9NR00 106 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 IMPAD1Q9NX62 359 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 DNAJC27Q9NZQ0 273 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 CYB5R1Q9UHQ9 305 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 FBXL3Q9UKT7 428 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 PRR14LQ5THK1 2151 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 PTPN13Q12923 2485 aa11.44□□□□□ -0.58
GTF3A-209ENST00000640289 LOC100509620A0A075B734 347 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 ZNF593O00488 134 aaPredicted RBP11.43□□□□□ -0.58
GTF3A-209ENST00000640289 SLC16A6O15403 523 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 CLIC3O95833 236 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 SPARCP09486 303 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 ZNF35P13682 527 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 CCNOP22674 350 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 STOMP27105 288 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 APLNRP35414 380 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 NAA10P41227 235 aaPredicted RBP11.43□□□□□ -0.58
GTF3A-209ENST00000640289 BLVRAP53004 296 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 CDH11P55287 796 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 HIST1H3AP68431 136 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 HGFACQ04756 655 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 ZNF672Q499Z4 452 aaPredicted RBP11.43□□□□□ -0.58
GTF3A-209ENST00000640289 HIST2H3PS2Q5TEC6 136 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 HIST2H3AQ71DI3 136 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 VASH1Q7L8A9 365 aaPredicted RBP11.43□□□□□ -0.58
GTF3A-209ENST00000640289 TIGD4Q8IY51 512 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 ENTHD1Q8IYW4 607 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 ZNF555Q8NEP9 628 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 OR6N2Q8NGY6 317 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 OR2AJ1Q8NGZ0 328 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 SMAP2Q8WU79 429 aaPredicted RBP11.43□□□□□ -0.58
GTF3A-209ENST00000640289 CYGBQ8WWM9 190 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 SLC7A6Q92536 515 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 MAP6Q96JE9 813 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 POM121L2Q96KW2 1035 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 INTS14Q96SY0 518 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 WACQ9BTA9 647 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 UBTD1Q9HAC8 227 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 PLEK2Q9NYT0 353 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 H2AFY2Q9P0M6 372 aaPredicted RBP11.43□□□□□ -0.58
GTF3A-209ENST00000640289 GDF2Q9UK05 429 aaPredicted RBP11.43□□□□□ -0.58
GTF3A-209ENST00000640289 POU2F3Q9UKI9 436 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 ATP23Q9Y6H3 246 aa11.43□□□□□ -0.58
GTF3A-209ENST00000640289 ANKHD1Q8IWZ3 2542 aaKnown RBP11.42□□□□□ -0.58
GTF3A-209ENST00000640289 PKDREJQ9NTG1 2253 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 C5orf49A4QMS7 147 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 E7EQL1 145 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 SYNGR3O43761 229 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 PTHP01270 115 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 MRPL3P09001 348 aaKnown RBP11.42□□□□□ -0.58
GTF3A-209ENST00000640289 GABRB1P18505 474 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 HTR5AP47898 357 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 ADARB1P78563 741 aaKnown RBP11.42□□□□□ -0.58
GTF3A-209ENST00000640289 KEAP1Q14145 624 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 RAB35Q15286 201 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 PCK2Q16822 640 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 TBC1D28Q2M2D7 210 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 LCN1P1Q5VSP4 162 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 KRT80Q6KB66 452 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 MEPCEQ7L2J0 689 aaKnown RBP11.42□□□□□ -0.58
GTF3A-209ENST00000640289 DPY19L4Q7Z388 723 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 DCXRQ7Z4W1 244 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 ALDH16A1Q8IZ83 802 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 DEPDC4Q8N2C3 294 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 GJC3Q8NFK1 279 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 OR10S1Q8NGN2 331 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 ZNF582Q96NG8 517 aaPredicted RBP11.42□□□□□ -0.58
GTF3A-209ENST00000640289 ADI1Q9BV57 179 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 VCXQ9H320 206 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 C1orf198Q9H425 327 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 CDH20Q9HBT6 801 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 PNRC2Q9NPJ4 139 aaKnown RBP11.42□□□□□ -0.58
GTF3A-209ENST00000640289 CISD1Q9NZ45 108 aaKnown RBP11.42□□□□□ -0.58
GTF3A-209ENST00000640289 KCNG2Q9UJ96 466 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 HECTD1Q9ULT8 2610 aa11.42□□□□□ -0.58
GTF3A-209ENST00000640289 OR6C6A6NF89 314 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 CYSRT1A8MQ03 144 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 HS3ST1O14792 307 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 ENTPD6O75354 484 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 DBHP09172 617 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 GDI2P50395 445 aaKnown RBP11.41□□□□□ -0.58
GTF3A-209ENST00000640289 HCCSP53701 268 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 AQP4P55087 323 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 SNRPGP62308 76 aaKnown RBP11.41□□□□□ -0.58
GTF3A-209ENST00000640289 EIF2B1Q14232 305 aaKnown RBP11.41□□□□□ -0.58
GTF3A-209ENST00000640289 TEX30Q5JUR7 227 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 ELFN2Q5R3F8 820 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 VHLLQ6RSH7 139 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 GID4Q8IVV7 300 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 DHRSXQ8N5I4 330 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 IL17RDQ8NFM7 739 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 OR1F12Q8NHA8 337 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 TRUB1Q8WWH5 349 aaKnown RBP11.41□□□□□ -0.58
GTF3A-209ENST00000640289 LURAP1Q96LR2 239 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 AMELYQ99218 206 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 OR51B6Q9H340 312 aa11.41□□□□□ -0.58
GTF3A-209ENST00000640289 SLC22A31A6NKX4 558 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms