RNA–Protein interactions for RNA: ENST00000636839.1

CLN3-250, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,018 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-250ENST00000636839 PRSS35Q8N3Z0 413 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 CPT1CQ8TCG5 803 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 APH1AQ96BI3 265 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 TMEM38BQ9NVV0 291 aa17.69■□□□□ 0.42
CLN3-250ENST00000636839 ATRXP46100 2492 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 OR14I1A6ND48 311 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 SLC22A1O15245 554 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 ZFPL1O95159 310 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 TPOP07202 933 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 TACSTD2P09758 323 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 HOXD11P31277 338 aaPredicted RBP17.68■□□□□ 0.42
CLN3-250ENST00000636839 FOXF2Q12947 444 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 FAM27D1Q5T7N8 215 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 RTL6Q6ICC9 239 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 RPL22L1Q6P5R6 122 aaKnown RBP17.68■□□□□ 0.42
CLN3-250ENST00000636839 ZNF100Q8IYN0 542 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 UBE2J2Q8N2K1 259 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 FGFBP3Q8TAT2 258 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 RNF133Q8WVZ7 376 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 MRPL48Q96GC5 212 aaKnown RBP17.68■□□□□ 0.42
CLN3-250ENST00000636839 DCSTAMPQ9H295 470 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 PTTG2Q9NZH5 202 aa17.68■□□□□ 0.42
CLN3-250ENST00000636839 TMCC2O75069 709 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 OPRL1P41146 370 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 GUCA1AP43080 201 aaPredicted RBP17.67■□□□□ 0.42
CLN3-250ENST00000636839 TDGF1P3P51864 188 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 TAS2R43P59537 309 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 MRPS34P82930 218 aaKnown RBP17.67■□□□□ 0.42
CLN3-250ENST00000636839 FAPQ12884 760 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 GPR50Q13585 617 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 RIPPLY2Q5TAB7 128 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 KCTD18Q6PI47 426 aaPredicted RBP17.67■□□□□ 0.42
CLN3-250ENST00000636839 CD200R1LQ6Q8B3 271 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 OR2AJ1Q8NGZ0 328 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 SMIM19Q96E16 107 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 C1orf198Q9H425 327 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 PNRC2Q9NPJ4 139 aaKnown RBP17.67■□□□□ 0.42
CLN3-250ENST00000636839 ASF1BQ9NVP2 202 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 SSR3Q9UNL2 185 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 SLC22A13Q9Y226 551 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 ITPR1Q14643 2758 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 RTTNQ86VV8 2226 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 DOCK7Q96N67 2140 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 AHRRA9YTQ3 701 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 GABRPO00591 440 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 FCGR2AP12318 317 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 ANOS1P23352 680 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 RPS11P62280 158 aaKnown RBP eCLIP17.67■□□□□ 0.42
CLN3-250ENST00000636839 KLHL24Q6TFL4 600 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 TEX19Q8NA77 164 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 OR2G2Q8NGZ5 317 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 ABHD4Q8TB40 342 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 GMPPAQ96IJ6 420 aaPredicted RBP17.67■□□□□ 0.42
CLN3-250ENST00000636839 FOXB1Q99853 325 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 PRORYQ9H606 182 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 B3GAT2Q9NPZ5 323 aa17.67■□□□□ 0.42
CLN3-250ENST00000636839 A0A096LPE4 126 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 A0A1W2PPK0 400 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 A0A1W2PPZ6 126 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 SMIM30A4D0T7 59 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 KIR3DL2P43630 455 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 SERPINB10P48595 397 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 LSM6P62312 80 aaKnown RBP17.66■□□□□ 0.42
CLN3-250ENST00000636839 ARF1P84077 181 aaKnown RBP17.66■□□□□ 0.42
CLN3-250ENST00000636839 TIMM50Q3ZCQ8 353 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 CCDC58Q4VC31 144 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 FAM27BQ5VT28 67 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 CD163Q86VB7 1156 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 DYNC2LI1Q8TCX1 351 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 RGP1Q92546 391 aaPredicted RBP17.66■□□□□ 0.42
CLN3-250ENST00000636839 BCL7BQ9BQE9 202 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 LINC00470Q9BZP3 86 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 SIAEQ9HAT2 523 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 BRD7Q9NPI1 651 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 GTF2A1LQ9UNN4 478 aa17.66■□□□□ 0.42
CLN3-250ENST00000636839 TRDV1A0A1B0GX56 115 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 SHISA3A0PJX4 238 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 SS18L1O75177 396 aaPredicted RBP17.65■□□□□ 0.42
CLN3-250ENST00000636839 TGM4P49221 684 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 ALKBH1Q13686 389 aaKnown RBP17.65■□□□□ 0.42
CLN3-250ENST00000636839 KRTCAP3Q53RY4 240 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 WDR38Q5JTN6 314 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 SKA3Q8IX90 412 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 CNEP1R1Q8N9A8 125 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 RPS4Y2Q8TD47 263 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 UPB1Q9UBR1 384 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 SLC5A6Q9Y289 635 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 EMC9Q9Y3B6 208 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 FAM215AQ9Y5M1 114 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 PMF1-BGLAPU3KQ54 211 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 TPRP12270 2363 aaKnown RBP17.65■□□□□ 0.42
CLN3-250ENST00000636839 SRSF10O75494 262 aaKnown RBP17.65■□□□□ 0.42
CLN3-250ENST00000636839 TOXO94900 526 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 H2BFMP0C1H6 154 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 CLEC2LP0C7M8 214 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 ABOP16442 354 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 RIDAP52758 137 aaKnown RBP17.65■□□□□ 0.42
CLN3-250ENST00000636839 GUSBP1Q15486 140 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 SLC22A24Q8N4F4 322 aa17.65■□□□□ 0.42
CLN3-250ENST00000636839 OR10AC1Q8NH08 325 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms