RNA–Protein interactions for RNA: ENST00000618469.1

BRCA1-228, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 718 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-228ENST00000618469 SOX14O95416 240 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 GPANK1O95872 356 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 CST1P01037 141 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 GASTP01350 101 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 IGFBP1P08833 259 aaPredicted RBP13.72□□□□□ -0.21
BRCA1-228ENST00000618469 SLC25A16P16260 332 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 CRABP1P29762 137 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 WNT5AP41221 380 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 RAD52P43351 418 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 ALDH3B1P43353 468 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 HTR5AP47898 357 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 EVX1P49640 407 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 PDLIM4P50479 330 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 ERFP50548 548 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 UCP2P55851 309 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 KLF3P57682 345 aaPredicted RBP13.72□□□□□ -0.21
BRCA1-228ENST00000618469 SRSF2Q01130 221 aaKnown RBP13.72□□□□□ -0.21
BRCA1-228ENST00000618469 DBPQ10586 325 aaPredicted RBP13.72□□□□□ -0.21
BRCA1-228ENST00000618469 BNIP1Q12981 228 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 AQP6Q13520 282 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 MICAQ29983 383 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 ALKBH6Q3KRA9 238 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 RFPL4BQ6ZWI9 263 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 SYT9Q86SS6 491 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 ZNF101Q8IZC7 436 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 OR10G2Q8NGC3 310 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 OR8D4Q8NGM9 314 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 OR1J1Q8NGS3 322 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 C11orf40Q8WZ69 217 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 SNX18Q96RF0 628 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 PIMREGQ9BSJ6 248 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 MYOZ1Q9NP98 299 aaPredicted RBP13.72□□□□□ -0.21
BRCA1-228ENST00000618469 RPRD1BQ9NQG5 326 aaKnown RBP13.72□□□□□ -0.21
BRCA1-228ENST00000618469 ASH2LQ9UBL3 628 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 NDRG4Q9ULP0 352 aaKnown RBP13.72□□□□□ -0.21
BRCA1-228ENST00000618469 POMPQ9Y244 141 aa13.72□□□□□ -0.21
BRCA1-228ENST00000618469 IGLV1-36A0A0B4J1U3 117 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 PHF1O43189 567 aaPredicted RBP13.71□□□□□ -0.21
BRCA1-228ENST00000618469 SGCEO43556 437 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 CLPTM1O96005 669 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 IFNA2P01563 188 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 GAAP10253 952 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 GLO1Q04760 184 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.71□□□□□ -0.21
BRCA1-228ENST00000618469 NKPD1Q17RQ9 610 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 SPATA46Q5T0L3 261 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 SLC35F1Q5T1Q4 408 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 RASSF6Q6ZTQ3 369 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 OR52E2Q8NGJ4 325 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 ABHD4Q8TB40 342 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 SYNPRQ8TBG9 265 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 NEU4Q8WWR8 484 aaPredicted RBP13.71□□□□□ -0.21
BRCA1-228ENST00000618469 WACQ9BTA9 647 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 CADM1Q9BY67 442 aaKnown RBP13.71□□□□□ -0.21
BRCA1-228ENST00000618469 RACGAP1Q9H0H5 632 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 PLEK2Q9NYT0 353 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 EIF3KQ9UBQ5 218 aaKnown RBP13.71□□□□□ -0.21
BRCA1-228ENST00000618469 REV1Q9UBZ9 1251 aa13.71□□□□□ -0.21
BRCA1-228ENST00000618469 A0A096LNT2 108 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 BHLHE40O14503 412 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 GNGT2O14610 69 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 IDH3BO43837 385 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 DAOP14920 347 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 GSTM3P21266 225 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 SELENOVP59797 346 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 LSM6P62312 80 aaKnown RBP13.7□□□□□ -0.22
BRCA1-228ENST00000618469 MEP1BQ16820 701 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 VASH1Q7L8A9 365 aaPredicted RBP13.7□□□□□ -0.22
BRCA1-228ENST00000618469 OR6V1Q8N148 313 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 SNX33Q8WV41 574 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 DGCR6LQ9BY27 220 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 SRA1Q9HD15 236 aaKnown RBP13.7□□□□□ -0.22
BRCA1-228ENST00000618469 ARMC1Q9NVT9 282 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 IL20Q9NYY1 176 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 TAAR3PQ9P1P4 343 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 B9D1Q9UPM9 204 aa13.7□□□□□ -0.22
BRCA1-228ENST00000618469 IGLV3-9A0A075B6K5 115 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 TCRBV3S1A0A5B6 114 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 OR6C68A6NDL8 312 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 NDUFS8O00217 210 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 GSC2O15499 205 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 FKBP6O75344 327 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 E2F6O75461 281 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 ABHD16AO95870 558 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 TP53P04637 393 aaPredicted RBP13.69□□□□□ -0.22
BRCA1-228ENST00000618469 NAT2P11245 290 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 ZNF250P15622 560 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 HOXB6P17509 224 aaKnown RBP13.69□□□□□ -0.22
BRCA1-228ENST00000618469 CBX1P83916 185 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 GK3PQ14409 553 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 UNQ6126/PRO20091Q6UXV3 157 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 CYB561A3Q8NBI2 242 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 GIPC3Q8TF64 312 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 IPCEF1Q8WWN9 437 aaPredicted RBP13.69□□□□□ -0.22
BRCA1-228ENST00000618469 NIPSNAP1Q9BPW8 284 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 TSSK6Q9BXA6 273 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 MS4A5Q9H3V2 200 aa13.69□□□□□ -0.22
BRCA1-228ENST00000618469 LOC390937A0A1W2PQ73 354 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 ARRDC5A6NEK1 342 aa13.68□□□□□ -0.22
BRCA1-228ENST00000618469 HAX1O00165 279 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms