RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 DEFB113Q30KQ7 82 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 ALKBH6Q3KRA9 238 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 NRN1LQ496H8 165 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 RFPL4BQ6ZWI9 263 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 VASH1Q7L8A9 365 aaPredicted RBP11.62□□□□□ -0.55
LINC00540-202ENST00000616974 NAA40Q86UY6 237 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 HIPK1Q86Z02 1210 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 CPOQ8IVL8 374 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 MUC15Q8N387 334 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 CBR4Q8N4T8 237 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 FAM169BQ8N8A8 192 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 OR6K6Q8NGW6 343 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 GTF3AQ92664 365 aaKnown RBP11.62□□□□□ -0.55
LINC00540-202ENST00000616974 MAP6Q96JE9 813 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 RAB3IPQ96QF0 476 aaPredicted RBP11.62□□□□□ -0.55
LINC00540-202ENST00000616974 AMELYQ99218 206 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 TRAF4Q9BUZ4 470 aaPredicted RBP11.62□□□□□ -0.55
LINC00540-202ENST00000616974 GRIP2Q9C0E4 1043 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 OR51V1Q9H2C8 321 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 ZNF556Q9HAH1 456 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 CCNB1IP1Q9NPC3 277 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 COMMD3-BMI1R4GMX3 469 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 GOSR1O95249 250 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 BAG2O95816 211 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 CLPTM1O96005 669 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 HLA-DQA2P01906 255 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 ALPLP05186 524 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 OR4A8P0C604 315 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 NR4A1P22736 598 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 IGFBP5P24593 272 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 HCCSP53701 268 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 TEKQ02763 1124 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 HSF2Q03933 536 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 LRRC36Q1X8D7 754 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 SPATC1Q76KD6 591 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 NANOS1Q8WY41 292 aaKnown RBP11.62□□□□□ -0.55
LINC00540-202ENST00000616974 ZMYND19Q96E35 227 aaPredicted RBP11.62□□□□□ -0.55
LINC00540-202ENST00000616974 DHRS9Q9BPW9 319 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 MRPL37Q9BZE1 423 aaKnown RBP11.62□□□□□ -0.55
LINC00540-202ENST00000616974 NDEL1Q9GZM8 345 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 FKBP7Q9Y680 259 aa11.62□□□□□ -0.55
LINC00540-202ENST00000616974 WNK2Q9Y3S1 2297 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 MALRD1Q5VYJ5 2156 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 OVOL3O00110 214 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 DOK2O60496 412 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 FCGR1AP12314 374 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 DNASE1P24855 282 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 ARHGDIAP52565 204 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 DAG1Q14118 895 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 GK3PQ14409 553 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 MAD2L1BPQ15013 274 aaPredicted RBP11.61□□□□□ -0.55
LINC00540-202ENST00000616974 SLC18B1Q6NT16 456 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 DTX2Q86UW9 622 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 CCDC36Q8IYA8 594 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 PQLC1Q8N2U9 271 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 PARP8Q8N3A8 854 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 SVOPLQ8N434 492 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 FNDC8Q8TC99 324 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 IL4I1Q96RQ9 567 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 SYT3Q9BQG1 590 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 RIBC2Q9H4K1 309 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 PNRC2Q9NPJ4 139 aaKnown RBP11.61□□□□□ -0.55
LINC00540-202ENST00000616974 JMJD1CQ15652 2540 aa11.61□□□□□ -0.55
LINC00540-202ENST00000616974 SYNGR3O43761 229 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 AHCYL1O43865 530 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 SELENOFO60613 162 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 HOXB6P17509 224 aaKnown RBP11.6□□□□□ -0.55
LINC00540-202ENST00000616974 CRABP1P29762 137 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 GRK5P34947 590 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 GLO1Q04760 184 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 LPCAT4Q643R3 524 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 TMEM53Q6P2H8 277 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 RFLNBQ8N5W9 214 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 SNX18Q96RF0 628 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 CACNG6Q9BXT2 260 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 SLC25A19Q9HC21 320 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 PLEK2Q9NYT0 353 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 CYB5R1Q9UHQ9 305 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 TIMM10BQ9Y5J6 103 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 ARHGAP32A7KAX9 2087 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 RIIAD1A6NNX1 92 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 ZAR1LA6NP61 321 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 SGCEO43556 437 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 SNAP29O95721 258 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 IGHV4-39P01824 125 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 NR2C1P13056 603 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 SLC2A5P22732 501 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 HTR5AP47898 357 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 ADAM8P78325 824 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 KCNMB1Q16558 191 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 SWI5Q1ZZU3 235 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 KLHL12Q53G59 568 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 ZFP1Q6P2D0 407 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 C20orf204Q6ZNR8 217 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 KCNS3Q9BQ31 491 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 TTTY10Q9BZA0 68 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 NKX1-2Q9UD57 310 aaPredicted RBP11.6□□□□□ -0.55
LINC00540-202ENST00000616974 KCNG2Q9UJ96 466 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 POLR1DQ9Y2S0 133 aa11.6□□□□□ -0.55
LINC00540-202ENST00000616974 KLHDC2Q9Y2U9 406 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms