RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 CENPAP49450 140 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 HILS1P60008 231 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 PSG7Q13046 419 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 OFCC1Q8IZS5 231 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 SLC7A6Q92536 515 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 CMBLQ96DG6 245 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 JMJD8Q96S16 334 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 MAN2C1Q9NTJ4 1040 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 MRGBPQ9NV56 204 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 NDRG4Q9ULP0 352 aaKnown RBP14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 NPTNQ9Y639 398 aa14.88□□□□□ -0.03
SHKBP1-223ENST00000600552 A0A087WUU8 490 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 FFAR1O14842 300 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 TNFSF4P23510 183 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 ZFP36P26651 326 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 IFI44LQ53G44 452 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 ZMAT1Q5H9K5 638 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 OR5AS1Q8N127 324 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 FAM216AQ8WUB2 273 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 ACOT11Q8WXI4 607 aaPredicted RBP14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 HSH2DQ96JZ2 352 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 ZNF570Q96NI8 536 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 RBM4Q9BWF3 364 aaKnown RBP14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 STARD10Q9Y365 291 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 PPIAL4AQ9Y536 164 aa14.87□□□□□ -0.03
SHKBP1-223ENST00000600552 TENM1Q9UKZ4 2725 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 HTR3EA5X5Y0 456 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 CDC42EP2O14613 210 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 SGCEO43556 437 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 PRSS23O95084 383 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 SERPINA1P01009 418 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 NCK1P16333 377 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 FPR2P25090 351 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 SCRN3Q0VDG4 424 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 FHL1Q13642 323 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 ZBED5Q49AG3 693 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 FOXL2NBQ6ZUU3 175 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 MBOAT2Q6ZWT7 520 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 ZER1Q7Z7L7 766 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 SLC15A3Q8IY34 581 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 FAM162AQ96A26 154 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 RASD2Q96D21 266 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 FAM46AQ96IP4 442 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 DIRC2Q96SL1 478 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 MMP26Q9NRE1 261 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 TMEM106BQ9NUM4 274 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 PLEK2Q9NYT0 353 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 IL20RAQ9UHF4 553 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 OPN4Q9UHM6 478 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 KLHL21Q9UJP4 597 aa14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 PURGQ9UJV8 347 aaKnown RBP14.86□□□□□ -0.03
SHKBP1-223ENST00000600552 TEX13CA0A0J9YWL9 993 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 IGHV3-64DA0A0J9YX35 117 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 SLC16A7O60669 478 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 FOXH1O75593 365 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 CD14P08571 375 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 H2AFXP16104 143 aaPredicted RBP14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 SLC7A2P52569 658 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 GUCY1A3Q02108 690 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 CDK5R2Q13319 367 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 MESTQ5EB52 335 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 RBMS3Q6XE24 437 aaKnown RBP14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 USP43Q70EL4 1123 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 CYP4Z1Q86W10 505 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 C1orf174Q8IYL3 243 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 RNF113BQ8IZP6 322 aaKnown RBP14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 ATG16L2Q8NAA4 619 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 ITLN1Q8WWA0 313 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 DUX5Q96PT3 197 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 NDEL1Q9GZM8 345 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 ESM1Q9NQ30 184 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 PTTG3PQ9NZH4 202 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 CGGBP1Q9UFW8 167 aaPredicted RBP14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 COA3Q9Y2R0 106 aaPredicted RBP14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 POLR1DQ9Y2S0 133 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 TANC2Q9HCD6 1990 aa14.85□□□□□ -0.03
SHKBP1-223ENST00000600552 TMEM89A2RUT3 159 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 PRSS37A4D1T9 235 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 H3BSA7 217 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 SOCS2O14508 198 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 IMPA2O14732 288 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 ZNF205O95201 554 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 ADH4P08319 380 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 COX4I1P13073 169 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 CTLA4P16410 223 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 ERFP50548 548 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 ARMCX4Q5H9R4 360 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 FGD3Q5JSP0 725 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 Q6ZR03 302 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 VASH1Q7L8A9 365 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 SYT9Q86SS6 491 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 KLHL36Q8N4N3 616 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 SIGLECL1Q8N7X8 197 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 NPEPL1Q8NDH3 523 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 C1QTNF5Q9BXJ0 243 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 DDX28Q9NUL7 540 aaKnown RBP14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 TBCCD1Q9NVR7 557 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 ASH2LQ9UBL3 628 aa14.84□□□□□ -0.03
SHKBP1-223ENST00000600552 PPP1R3CQ9UQK1 317 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms