RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 OR6X1Q8NH79 312 aa12.86□□□□□ -0.35
VRK3-217ENST00000599538 PSMF1Q92530 271 aa12.86□□□□□ -0.35
VRK3-217ENST00000599538 SLAMF6Q96DU3 332 aa12.86□□□□□ -0.35
VRK3-217ENST00000599538 MARVELD1Q9BSK0 173 aa12.86□□□□□ -0.35
VRK3-217ENST00000599538 MRPL15Q9P015 296 aaKnown RBP12.86□□□□□ -0.35
VRK3-217ENST00000599538 OR52A1Q9UKL2 312 aa12.86□□□□□ -0.35
VRK3-217ENST00000599538 ALG5Q9Y673 324 aa12.86□□□□□ -0.35
VRK3-217ENST00000599538 CACNG2Q9Y698 323 aa12.86□□□□□ -0.35
VRK3-217ENST00000599538 A0A087WZY1 265 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 A0A0J9YW62 118 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 HPP00738 406 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 H2BFMP0C1H6 154 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 EFNB2P52799 333 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 CLDN17P56750 224 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 SLC35A1P78382 337 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 CHAF1BQ13112 559 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 ACER2Q5QJU3 275 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 PHYHD1Q5SRE7 291 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 CDCP2Q5VXM1 449 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 SLC25A47Q6Q0C1 308 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 LINGO2Q7L985 606 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 YRDCQ86U90 279 aaKnown RBP12.85□□□□□ -0.35
VRK3-217ENST00000599538 OR51D1Q8NGF3 324 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 OR51A2Q8NGJ7 313 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 DMRTB1Q96MA1 342 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 ZNF385AQ96PM9 386 aaKnown RBP12.85□□□□□ -0.35
VRK3-217ENST00000599538 DDA1Q9BW61 102 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 DEPPQ9NTK1 212 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 TAS2R4Q9NYW5 299 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 FOXJ3Q9UPW0 622 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 DHDHQ9UQ10 334 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 LOC107986453A0A1B0GWG9 222 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 HMX3A6NHT5 357 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 TNFSF11O14788 317 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 PMS2P2O95744 297 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 QDPRP09417 244 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 RAB40ALP0C0E4 278 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 CALCBP10092 127 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 ENPP1P22413 925 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 CDK2P24941 298 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 HIST3H3Q16695 136 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 H3F3CQ6NXT2 135 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 BEST3Q8N1M1 668 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 TOMM5Q8N4H5 51 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 OR10H5Q8NGA6 315 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 SMIM4Q8WVI0 70 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 SLC7A6Q92536 515 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 LIN37Q96GY3 246 aaPredicted RBP12.85□□□□□ -0.35
VRK3-217ENST00000599538 CMTM3Q96MX0 182 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 ZPBPQ9BS86 351 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 MED13Q9UHV7 2174 aa12.85□□□□□ -0.35
VRK3-217ENST00000599538 P2RY10O00398 339 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 ORC5O43913 435 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 CBR3O75828 277 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 B3GALT5-AS1P59052 145 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 PITPNAQ00169 270 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 HIST2H2ABQ8IUE6 130 aaPredicted RBP12.84□□□□□ -0.35
VRK3-217ENST00000599538 OR52I2Q8NH67 350 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 HAVCR1Q96D42 359 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 TMEM41AQ96HV5 264 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 SGCZQ96LD1 299 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 FYTTD1Q96QD9 318 aaKnown RBP12.84□□□□□ -0.35
VRK3-217ENST00000599538 SRXN1Q9BYN0 137 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 DDX28Q9NUL7 540 aaKnown RBP12.84□□□□□ -0.35
VRK3-217ENST00000599538 FAM206AQ9NX38 181 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 KLK11Q9UBX7 282 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 STEAP1Q9UHE8 339 aa12.84□□□□□ -0.35
VRK3-217ENST00000599538 GDF2Q9UK05 429 aaPredicted RBP12.84□□□□□ -0.35
VRK3-217ENST00000599538 EP300Q09472 2414 aaPredicted RBP12.84□□□□□ -0.35
VRK3-217ENST00000599538 PINLYPA6NC86 204 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 LRRC3CA6NJW4 275 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 RER1O15258 196 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 GSTZ1O43708 216 aaPredicted RBP12.83□□□□□ -0.35
VRK3-217ENST00000599538 MT-CO3P00414 261 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 MT-ND4P03905 459 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 GDNFP39905 211 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 CCR6P51684 374 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 ZNF775Q96BV0 537 aaPredicted RBP12.83□□□□□ -0.35
VRK3-217ENST00000599538 EDEM2Q9BV94 578 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 C1orf198Q9H425 327 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 RANGRFQ9HD47 186 aaPredicted RBP12.83□□□□□ -0.35
VRK3-217ENST00000599538 ASH2LQ9UBL3 628 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 ZNF221Q9UK13 617 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 N6AMT1Q9Y5N5 214 aa12.83□□□□□ -0.35
VRK3-217ENST00000599538 KIAA1549Q9HCM3 1950 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 TRAV6A0A075B6T7 132 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 LOC102725191A0A1B0GVB3 256 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 ZNF726A6NNF4 738 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 INMT-MINDY4F8WBC2 141 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 CTDSPLO15194 276 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 TTRP02766 147 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 P04436 131 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 SERPINA7P05543 415 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 ICAM2P13598 275 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 IGFBP3P17936 291 aaPredicted RBP12.83□□□□□ -0.36
VRK3-217ENST00000599538 DLSTP36957 453 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 ART1P52961 327 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 KLF9Q13886 244 aaPredicted RBP12.83□□□□□ -0.36
VRK3-217ENST00000599538 TMEM255AQ5JRV8 349 aa12.83□□□□□ -0.36
VRK3-217ENST00000599538 DEGS2Q6QHC5 323 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms