RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 COX5BP10606 129 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 RRM2P31350 389 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 CDKN2AP42771 156 aaKnown RBP11.1□□□□□ -0.63
LIG1-212ENST00000596549 HTR5AP47898 357 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 ZNF81P51508 661 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 SELENOVP59797 346 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 PCBD1P61457 104 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 SRSF2Q01130 221 aaKnown RBP11.1□□□□□ -0.63
LIG1-212ENST00000596549 SCRN3Q0VDG4 424 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 AQP6Q13520 282 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 TSTQ16762 297 aaKnown RBP11.1□□□□□ -0.63
LIG1-212ENST00000596549 PCGF3Q3KNV8 242 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 ZNF718Q3SXZ3 478 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 GPR139Q6DWJ6 353 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 TMEM154Q6P9G4 183 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 SMARCD3Q6STE5 483 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 DPY19L2P2Q6ZN68 376 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 USP51Q70EK9 711 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 ADCK1Q86TW2 530 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 ALDH16A1Q8IZ83 802 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 C4orf45Q96LM5 186 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 TSSK2Q96PF2 358 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 LRRC37BQ96QE4 947 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 NDEL1Q9GZM8 345 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 NUAK2Q9H093 628 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 OR52D1Q9H346 318 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 SAP30LQ9HAJ7 183 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 ASH2LQ9UBL3 628 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 EIF3KQ9UBQ5 218 aaKnown RBP11.1□□□□□ -0.63
LIG1-212ENST00000596549 GPR160Q9UJ42 338 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 NDRG4Q9ULP0 352 aaKnown RBP11.1□□□□□ -0.63
LIG1-212ENST00000596549 AURKCQ9UQB9 309 aa11.1□□□□□ -0.63
LIG1-212ENST00000596549 IGLV1-36A0A0B4J1U3 117 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 IGHV1-69-2A0A0G2JMI3 117 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 RNF212BA8MTL3 300 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 H3BSA7 217 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 PPIHO43447 177 aaKnown RBP11.09□□□□□ -0.63
LIG1-212ENST00000596549 SGCEO43556 437 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 SPRY3O43610 288 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 GMNNO75496 209 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 ABHD16AO95870 558 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 ITGA2P17301 1181 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 FPR3P25089 353 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 GCH1P30793 250 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 RBMXP38159 391 aaKnown RBP11.09□□□□□ -0.63
LIG1-212ENST00000596549 CRYBB2P43320 205 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 ERFP50548 548 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 RPS6KA3P51812 740 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 DVL1P1P54792 670 aaPredicted RBP11.09□□□□□ -0.63
LIG1-212ENST00000596549 LMO4P61968 165 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 KRT72Q14CN4 511 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 MEP1BQ16820 701 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 KRTAP24-1Q3LI83 254 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 CCDC92Q53HC0 331 aaPredicted RBP11.09□□□□□ -0.63
LIG1-212ENST00000596549 AVPI1Q5T686 147 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 C16orf89Q6UX73 402 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 FITM2Q8N6M3 262 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 SLC7A6Q92536 515 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 WACQ9BTA9 647 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 RERGLQ9H628 205 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 IL1RAPQ9NPH3 570 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 KRCC1Q9NPI7 259 aaPredicted RBP11.09□□□□□ -0.63
LIG1-212ENST00000596549 TREM2Q9NZC2 230 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 ATRQ13535 2644 aa11.09□□□□□ -0.63
LIG1-212ENST00000596549 TCRBV5S2A0A599 114 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 OR6C6A6NF89 314 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 OR10H3O60404 316 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 KHDRBS3O75525 346 aaKnown RBP11.08□□□□□ -0.64
LIG1-212ENST00000596549 TFP02787 698 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 ADH4P08319 380 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 HNF1AP20823 631 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 GUCA1AP43080 201 aaPredicted RBP11.08□□□□□ -0.64
LIG1-212ENST00000596549 GSSP48637 474 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 TMEM33P57088 247 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 LSM6P62312 80 aaKnown RBP11.08□□□□□ -0.64
LIG1-212ENST00000596549 MVKQ03426 396 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 PSG7Q13046 419 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 FAM209AQ5JX71 171 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 PGBD2Q6P3X8 592 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 ZNF620Q6ZNG0 422 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 RINLQ6ZS11 566 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 ZDHHC21Q8IVQ6 265 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 GLB1L2Q8IW92 636 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 OR9Q2Q8NGE9 314 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 SPATA3Q8NHX4 192 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 ERMAPQ96PL5 475 aaPredicted RBP11.08□□□□□ -0.64
LIG1-212ENST00000596549 FN3KQ9H479 309 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 ELOVL3Q9HB03 270 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 LPAR2Q9HBW0 351 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 MSL2Q9HCI7 577 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 PLEK2Q9NYT0 353 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 KLHL21Q9UJP4 597 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 WIPI2Q9Y4P8 454 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 LYVE1Q9Y5Y7 322 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 LHFPL6Q9Y693 200 aa11.08□□□□□ -0.64
LIG1-212ENST00000596549 B4DSR2 109 aa11.07□□□□□ -0.64
LIG1-212ENST00000596549 ARPC3O15145 178 aa11.07□□□□□ -0.64
LIG1-212ENST00000596549 RER1O15258 196 aa11.07□□□□□ -0.64
LIG1-212ENST00000596549 DEAF1O75398 565 aaPredicted RBP11.07□□□□□ -0.64
LIG1-212ENST00000596549 UBOX5O94941 541 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms