RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 RFPL4BQ6ZWI9 263 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.48□□□□□ -0.25
LIG3-215ENST00000592690 ALDH16A1Q8IZ83 802 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 OR1J1Q8NGS3 322 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 OR4Q3Q8NH05 313 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 C10orf105Q8TEF2 133 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 SLCO4A1Q96BD0 722 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 NIPSNAP1Q9BPW8 284 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 BCL2L14Q9BZR8 327 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 RACGAP1Q9H0H5 632 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 TBC1D23Q9NUY8 699 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 ARMC1Q9NVT9 282 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 ASH2LQ9UBL3 628 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 DUSP13Q9UII6 198 aa13.48□□□□□ -0.25
LIG3-215ENST00000592690 FBXO9Q9UK97 447 aaPredicted RBP13.48□□□□□ -0.25
LIG3-215ENST00000592690 NSD1Q96L73 2696 aaPredicted RBP13.47□□□□□ -0.25
LIG3-215ENST00000592690 IGLV3-9A0A075B6K5 115 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 A0A1W2PPW3 197 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 FAM171A2A8MVW0 826 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 GNGT2O14610 69 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 SGCEO43556 437 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 ZNF250P15622 560 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 GSTM3P21266 225 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 LSM6P62312 80 aaKnown RBP13.47□□□□□ -0.25
LIG3-215ENST00000592690 CBX1P83916 185 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 GK3PQ14409 553 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 KCNMB1Q16558 191 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 ALKBH6Q3KRA9 238 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 SPATA46Q5T0L3 261 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 VASH1Q7L8A9 365 aaPredicted RBP13.47□□□□□ -0.25
LIG3-215ENST00000592690 ZBTB46Q86UZ6 589 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 HS3ST5Q8IZT8 346 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 CYB561A3Q8NBI2 242 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 NPEPL1Q8NDH3 523 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 SLC26A10Q8NG04 563 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 ABHD4Q8TB40 342 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 SYNPRQ8TBG9 265 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 GIPC3Q8TF64 312 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 FEVQ99581 238 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 WACQ9BTA9 647 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 TSSK6Q9BXA6 273 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 REV1Q9UBZ9 1251 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 POLR1DQ9Y2S0 133 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 LHFPL6Q9Y693 200 aa13.47□□□□□ -0.25
LIG3-215ENST00000592690 RER1O15258 196 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 NGFP01138 241 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 TFP02787 698 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 CSF3P09919 207 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 NAT2P11245 290 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 SLC25A16P16260 332 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 HTR5AP47898 357 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 PDLIM4P50479 330 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 KLF3P57682 345 aaPredicted RBP13.46□□□□□ -0.25
LIG3-215ENST00000592690 GLO1Q04760 184 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 CARTPTQ16568 116 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 CCDC92Q53HC0 331 aaPredicted RBP13.46□□□□□ -0.25
LIG3-215ENST00000592690 TMEM255AQ5JRV8 349 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 ZNF362Q5T0B9 420 aaPredicted RBP13.46□□□□□ -0.25
LIG3-215ENST00000592690 LNX2Q8N448 690 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 PAPD5Q8NDF8 572 aaKnown RBP13.46□□□□□ -0.25
LIG3-215ENST00000592690 NEU4Q8WWR8 484 aaPredicted RBP13.46□□□□□ -0.25
LIG3-215ENST00000592690 SLC7A6Q92536 515 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 DDOQ99489 341 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 PLEK2Q9NYT0 353 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 PDP1Q9P0J1 537 aaPredicted RBP13.46□□□□□ -0.25
LIG3-215ENST00000592690 TAAR3PQ9P1P4 343 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 EIF3KQ9UBQ5 218 aaKnown RBP13.46□□□□□ -0.25
LIG3-215ENST00000592690 NDRG4Q9ULP0 352 aaKnown RBP13.46□□□□□ -0.25
LIG3-215ENST00000592690 NF1P21359 2839 aa13.46□□□□□ -0.25
LIG3-215ENST00000592690 TANC2Q9HCD6 1990 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 FN1P02751 2386 aaKnown RBP13.45□□□□□ -0.26
LIG3-215ENST00000592690 ARRDC5A6NEK1 342 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 OR6C6A6NF89 314 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 ICMTO60725 284 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 E2F6O75461 281 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 ATP5HO75947 161 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 ERCC1P07992 297 aaPredicted RBP13.45□□□□□ -0.26
LIG3-215ENST00000592690 COX5BP10606 129 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 DAOP14920 347 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 HOXB6P17509 224 aaKnown RBP13.45□□□□□ -0.26
LIG3-215ENST00000592690 PYCR1P32322 319 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 MPV17P39210 176 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 RASSF2P50749 326 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 NKPD1Q17RQ9 610 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 SLC36A3Q495N2 470 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 CORO6Q6QEF8 472 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 CD300LDQ6UXZ3 194 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 SLC37A3Q8NCC5 494 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 SLC25A40Q8TBP6 338 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 ZNRF4Q8WWF5 429 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 IPCEF1Q8WWN9 437 aaPredicted RBP13.45□□□□□ -0.26
LIG3-215ENST00000592690 GTF3AQ92664 365 aaKnown RBP13.45□□□□□ -0.26
LIG3-215ENST00000592690 MARS2Q96GW9 593 aaKnown RBP13.45□□□□□ -0.26
LIG3-215ENST00000592690 C4orf45Q96LM5 186 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 OR2J1Q9GZK6 312 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 MS4A5Q9H3V2 200 aa13.45□□□□□ -0.26
LIG3-215ENST00000592690 MYOZ1Q9NP98 299 aaPredicted RBP13.45□□□□□ -0.26
LIG3-215ENST00000592690 VWC2LB2RUY7 222 aa13.44□□□□□ -0.26
LIG3-215ENST00000592690 LYNX1G3V0Z9 82 aa13.44□□□□□ -0.26
LIG3-215ENST00000592690 TIPRLO75663 272 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms