RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 PATE4P0C8F1 98 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 SRD5A1P18405 259 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 TCN1P20061 433 aaPredicted RBP8.99□□□□□ -0.97
LIG3-212ENST00000590181 APEX1P27695 318 aaKnown RBP8.99□□□□□ -0.97
LIG3-212ENST00000590181 NOS3P29474 1203 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 CDAP32320 146 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 MAGEA2P43356 314 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 GSSP48637 474 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 BLVRAP53004 296 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 SPIBQ01892 262 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 COX10Q12887 443 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 TRAP1Q12931 704 aaKnown RBP8.99□□□□□ -0.97
LIG3-212ENST00000590181 IL17RELQ6ZVW7 336 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 JAZF1Q86VZ6 243 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 FITM2Q8N6M3 262 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 RNF148Q8N7C7 305 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 CLDN22Q8N7P3 220 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 OR52L1Q8NGH7 329 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 OR1J1Q8NGS3 322 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 ASB9Q96DX5 294 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 MARS2Q96GW9 593 aaKnown RBP8.99□□□□□ -0.97
LIG3-212ENST00000590181 C4orf45Q96LM5 186 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 Q96M85 177 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 YY1AP1Q9H869 796 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 IL20Q9NYY1 176 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 TAAR3PQ9P1P4 343 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 KCNS2Q9ULS6 477 aa8.99□□□□□ -0.97
LIG3-212ENST00000590181 LOC100509620A0A075B734 347 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 TRBV4-1A0A0J9YWV2 114 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 A0A1W2PPL8 197 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 OR6C6A6NF89 314 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 B4DSR2 109 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 LMX1BO60663 402 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 SLC16A7O60669 478 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 TNFSF4P23510 183 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 IGFBP5P24593 272 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 CRYBB2P43320 205 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 FMODQ06828 376 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 GGTLC2Q14390 218 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 CARTPTQ16568 116 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 MESTQ5EB52 335 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 LCN8Q6JVE9 175 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 SLC27A4Q6P1M0 643 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 PEG10Q86TG7 708 aaKnown RBP8.98□□□□□ -0.97
LIG3-212ENST00000590181 ZBTB46Q86UZ6 589 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 LINC01356Q8N9X3 169 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 FANK1Q8TC84 345 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 PTP4A1Q93096 173 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 TIMD4Q96H15 378 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 LRGUKQ96M69 825 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 SYT3Q9BQG1 590 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 BPESC1Q9GZL8 116 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 RACGAP1Q9H0H5 632 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 HDHD2Q9H0R4 259 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 WNT5BQ9H1J7 359 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 GMPR2Q9P2T1 348 aaKnown RBP8.98□□□□□ -0.97
LIG3-212ENST00000590181 KLHL21Q9UJP4 597 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 ADAM18Q9Y3Q7 739 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 IER3IP1Q9Y5U9 82 aa8.98□□□□□ -0.97
LIG3-212ENST00000590181 LOC100289279A0A1B0GTE1 492 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 ARRDC5A6NEK1 342 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 AQP12BA6NM10 295 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 ABHD16AO95870 558 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 CD55P08174 381 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 FAM157BP0CG42 384 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 IGHV4-31P0DP07 118 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 RAP2AP10114 183 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 RAC2P15153 192 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 ZNF26P17031 533 aaPredicted RBP8.97□□□□□ -0.97
LIG3-212ENST00000590181 TNFRSF1AP19438 455 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 CCNOP22674 350 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 GPR6P46095 362 aaPredicted RBP8.97□□□□□ -0.97
LIG3-212ENST00000590181 ZNF81P51508 661 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 PPP1CBP62140 327 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 HIST1H3AP68431 136 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 ENDOGQ14249 297 aaKnown RBP8.97□□□□□ -0.97
LIG3-212ENST00000590181 SEC23BQ15437 767 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 HFEQ30201 348 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 ELFN2Q5R3F8 820 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 HIST2H3PS2Q5TEC6 136 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 CD300LDQ6UXZ3 194 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 HIST2H3AQ71DI3 136 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 RHOUQ7L0Q8 258 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 IGFN1Q86VF2 1251 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 AQP12AQ8IXF9 295 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 OR2AJ1Q8NGZ0 328 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 OR52J3Q8NH60 311 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 KLF14Q8TD94 323 aaPredicted RBP8.97□□□□□ -0.97
LIG3-212ENST00000590181 HTRA1Q92743 480 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 RAB1CQ92928 201 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 RASD2Q96D21 266 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 ELMOD3Q96FG2 381 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 ERMAPQ96PL5 475 aaPredicted RBP8.97□□□□□ -0.97
LIG3-212ENST00000590181 COQ7Q99807 217 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 IFT27Q9BW83 186 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 CDADC1Q9BWV3 514 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 NUAK2Q9H093 628 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 SYT4Q9H2B2 425 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 OR52D1Q9H346 318 aa8.97□□□□□ -0.97
LIG3-212ENST00000590181 PLEK2Q9NYT0 353 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms