RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	GAL3ST3	Q96A11	431 aa		10.5	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RCC1L	Q96I51	464 aa	Known RBP	10.5	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	PGLYRP3	Q96LB9	341 aa		10.5	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	FOXN4	Q96NZ1	517 aa		10.5	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	C7orf50	Q9BRJ6	194 aa	Known RBP	10.5	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	MYOZ1	Q9NP98	299 aa	Predicted RBP	10.5	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	ISYNA1	Q9NPH2	558 aa		10.5	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	TMEM265	A0A087WTH1	108 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	NPIPA2	E9PIF3	369 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063		J3QRE1	110 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	SYT5	O00445	386 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	CCS	O14618	274 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	EIF3G	O75821	320 aa	Known RBP eCLIP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	LDOC1	O95751	146 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	CYB5R3	P00387	301 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	CRYAB	P02511	175 aa	Known RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RAF1	P04049	648 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	ALDOB	P05062	364 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	SLC35G6	P0C7Q6	338 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	BCKDHB	P21953	392 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	GDNF	P39905	211 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	EMD	P50402	254 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RGS1	Q08116	209 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	DUSP8	Q13202	625 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	USP53	Q70EK8	1073 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	OR10A7	Q8NGE5	316 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	SCMH1	Q96GD3	660 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	CCDC3	Q9BQI4	270 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	LRFN3	Q9BTN0	628 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	HEXA-AS1	Q9H8Q6	139 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	MTHFD2L	Q9H903	347 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	PARPBP	Q9NWS1	579 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	GDF2	Q9UK05	429 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	SIT1	Q9Y3P8	196 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RTTN	Q86VV8	2226 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	TRBV2	A0A0J9YWF9	115 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	TRAPPC13	A5PLN9	417 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	FAM86C2P	A6NEL3	165 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RIIAD1	A6NNX1	92 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	ARPC1B	O15143	372 aa	Known RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	LYPD3	O95274	346 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	AHSA1	O95433	338 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	HIST1H1C	P16403	213 aa	Known RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	ANXA7	P20073	488 aa	Known RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	EDNRA	P25101	427 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	BLK	P51451	505 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	FGF8	P55075	233 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	PLA2G7	Q13093	441 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	TOMM34	Q15785	309 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	GSG1	Q2KHT4	349 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	SFRP5	Q5T4F7	317 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RPL13AP3	Q6NVV1	102 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	FAM198B	Q6UWH4	519 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	FCRLA	Q7L513	359 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	BHLHA15	Q7RTS1	189 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	BMP8A	Q7Z5Y6	402 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	CMTM4	Q8IZR5	234 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	OR2L13	Q8N349	312 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	NMNAT3	Q96T66	252 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	MS4A7	Q9GZW8	240 aa	Predicted RBP	10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	FAM60A	Q9NP50	221 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	PILRA	Q9UKJ1	303 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	SIGLEC7	Q9Y286	467 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	IER3IP1	Q9Y5U9	82 aa		10.49	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	GALR2	O43603	387 aa	Predicted RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RDH16	O75452	317 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	HOXC4	P09017	264 aa	Predicted RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RPL4	P36578	427 aa	Known RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	MELK	Q14680	651 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	HLX	Q14774	488 aa	Predicted RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	AMZ1	Q400G9	498 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	NKAIN2	Q5VXU1	208 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	NHLRC1	Q6VVB1	395 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RANBP3L	Q86VV4	465 aa	Predicted RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	OR52I2	Q8NH67	350 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	GPBAR1	Q8TDU6	330 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RERG	Q96A58	199 aa	Predicted RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	DAZAP1	Q96EP5	407 aa	Known RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RHOV	Q96L33	236 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	NECAB3	Q96P71	396 aa	Predicted RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	NPAS1	Q99742	590 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	KCNK15	Q9H427	330 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	NOX4	Q9NPH5	578 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	CA10	Q9NS85	328 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	MTCH1	Q9NZJ7	389 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	FLRT3	Q9NZU0	649 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	GPN3	Q9UHW5	284 aa	Predicted RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	NAGK	Q9UJ70	344 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	ZNF223	Q9UK11	482 aa	Predicted RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	CACNA1E	Q15878	2313 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	PI4KA	P42356	2102 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063		H7C1C5	153 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	LGALS8	O00214	317 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	B3GALT2	O43825	422 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	IGKV1D-16	P01601	117 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	EPX	P11678	715 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	RBMS1	P29558	406 aa	Known RBP	10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	CXCL12	P48061	93 aa		10.48	□□□□□ -0.73
CDK5RAP3-231	ENST00000584063	LCN6	P62502	163 aa		10.48	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms