RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 ISG15P05161 165 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 MSX1P28360 303 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 HOXC12P31275 282 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 GNG2P59768 71 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 POU3F1Q03052 451 aaPredicted RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 SLC25A53Q5H9E4 307 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 LYSMD4Q5XG99 296 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 THOC7Q6I9Y2 204 aaKnown RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 DCXRQ7Z4W1 244 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 PLPP7Q8NBV4 271 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 SLC25A28Q96A46 364 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 SPSB2Q99619 263 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 G6PC2Q9NQR9 355 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 PRMT8Q9NR22 394 aaPredicted RBP9.02□□□□□ -0.97
VPS53-220ENST00000576149 MED29Q9NX70 200 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 TAS2R8Q9NYW2 309 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 TAS2R4Q9NYW5 299 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 KLRF1Q9NZS2 232 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 CKLFQ9UBR5 152 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 EMC9Q9Y3B6 208 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 SIT1Q9Y3P8 196 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 PCDHGA5Q9Y5G8 931 aa9.02□□□□□ -0.97
VPS53-220ENST00000576149 IGLV3-32A0A0A0MS00 114 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 SHISA8B8ZZ34 492 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 SIGLEC6O43699 453 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 EFNA2O43921 213 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 ZFAND5O76080 213 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 HRGP04196 525 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 IL5P05113 134 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 DNASE1P24855 282 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 FAUP35544 74 aaKnown RBP9.01□□□□□ -0.97
VPS53-220ENST00000576149 PTGDSP41222 190 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 HAAOP46952 286 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 DHPSP49366 369 aaPredicted RBP9.01□□□□□ -0.97
VPS53-220ENST00000576149 SELENOPP49908 381 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 PCGF3Q3KNV8 242 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 GLT8D1Q68CQ7 371 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 SLC25A25Q6KCM7 469 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 CORO6Q6QEF8 472 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 DEGS2Q6QHC5 323 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 LYPD8Q6UX82 237 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 SLC25A44Q96H78 314 aaPredicted RBP9.01□□□□□ -0.97
VPS53-220ENST00000576149 MRGPRX4Q96LA9 322 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 CCDC74BQ96LY2 380 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 SEC22CQ9BRL7 303 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 KCNK15Q9H427 330 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 ALKBH4Q9NXW9 302 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 PPP4R1LQ9P1A2 415 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 MYOTQ9UBF9 498 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 OR52A1Q9UKL2 312 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 HHLA2Q9UM44 414 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 B3GALT5Q9Y2C3 310 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 EXPH5Q8NEV8 1989 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 SDK1Q7Z5N4 2213 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 TRAV18A0A075B6X5 111 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 TMEM272A0A1B0GTI8 110 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 A0A1W2PNV4 684 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 A0A1W2PQ72 361 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 G3V3Q6 166 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 H3BML4 177 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 TSC22D2O75157 780 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 KDM4BO94953 1096 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 TPOP07202 933 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 CSF1P09603 554 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 CPN1P15169 458 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 ACHEP22303 614 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 PER3P56645 1201 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 CAMK2BQ13554 666 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 ZBTB37Q5TC79 503 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 FAM69BQ5VUD6 431 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 LCN10Q6JVE6 187 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 LRFN4Q6PJG9 635 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 TSSK4Q6SA08 328 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 TMEM205Q6UW68 189 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 NLRC3Q7RTR2 1065 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 LINC00346Q8IVM7 164 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 C5orf34Q96MH7 638 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 CRB3Q9BUF7 120 aa9.01□□□□□ -0.97
VPS53-220ENST00000576149 METTL17Q9H7H0 456 aaPredicted RBP9.01□□□□□ -0.97
VPS53-220ENST00000576149 ELF5Q9UKW6 265 aaPredicted RBP9.01□□□□□ -0.97
VPS53-220ENST00000576149 RPH3AQ9Y2J0 694 aaPredicted RBP9.01□□□□□ -0.97
VPS53-220ENST00000576149 SNRPGP15A8MWD9 76 aa9□□□□□ -0.97
VPS53-220ENST00000576149 ANXA7P20073 488 aaKnown RBP9□□□□□ -0.97
VPS53-220ENST00000576149 HTR2CP28335 458 aa9□□□□□ -0.97
VPS53-220ENST00000576149 PRSS3P35030 304 aa9□□□□□ -0.97
VPS53-220ENST00000576149 ZNF41P51814 821 aaPredicted RBP9□□□□□ -0.97
VPS53-220ENST00000576149 PPA1Q15181 289 aa9□□□□□ -0.97
VPS53-220ENST00000576149 PLPPR5Q32ZL2 321 aa9□□□□□ -0.97
VPS53-220ENST00000576149 LGALSLQ3ZCW2 172 aaPredicted RBP9□□□□□ -0.97
VPS53-220ENST00000576149 ZNF626Q68DY1 528 aa9□□□□□ -0.97
VPS53-220ENST00000576149 IGF2-ASQ6U949 168 aa9□□□□□ -0.97
VPS53-220ENST00000576149 NHLRC1Q6VVB1 395 aa9□□□□□ -0.97
VPS53-220ENST00000576149 ZNF704Q6ZNC4 412 aaPredicted RBP9□□□□□ -0.97
VPS53-220ENST00000576149 PPP1R3BQ86XI6 285 aa9□□□□□ -0.97
VPS53-220ENST00000576149 SPICQ8N5J4 248 aa9□□□□□ -0.97
VPS53-220ENST00000576149 OR10G3Q8NGC4 313 aa9□□□□□ -0.97
VPS53-220ENST00000576149 OR4C16Q8NGL9 310 aa9□□□□□ -0.97
VPS53-220ENST00000576149 OR2T35Q8NGX2 323 aa9□□□□□ -0.97
VPS53-220ENST00000576149 POC1BQ8TC44 478 aa9□□□□□ -0.97
VPS53-220ENST00000576149 RNF133Q8WVZ7 376 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms