RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 SLC35D3Q5M8T2 416 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 NCMAPQ5T1S8 102 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 C1QTNF12Q5T7M4 302 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 TTC23Q5W5X9 447 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 DNM1P34Q6PK57 102 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 VASH1Q7L8A9 365 aaPredicted RBP8.06□□□□□ -1.12
VPS35-211ENST00000569950 SYT9Q86SS6 491 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 CDC20BQ86Y33 519 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 WFDC8Q8IUA0 241 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 LINC00346Q8IVM7 164 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 AKR7LQ8NHP1 331 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 CNIH3Q8TBE1 160 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 FAM222BQ8WU58 562 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 USB1Q9BQ65 265 aaKnown RBP8.06□□□□□ -1.12
VPS35-211ENST00000569950 MED18Q9BUE0 208 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 ANKRD60Q9BZ19 345 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 ASH2LQ9UBL3 628 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 KCNG2Q9UJ96 466 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 COPS3Q9UNS2 423 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 NOTCH2Q04721 2471 aa8.06□□□□□ -1.12
VPS35-211ENST00000569950 TEX15Q9BXT5 2789 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 CHD3Q12873 2000 aaKnown RBP8.05□□□□□ -1.12
VPS35-211ENST00000569950 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP8.05□□□□□ -1.12
VPS35-211ENST00000569950 C5orf63A6NC05 138 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 SHISA9B4DS77 424 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 UBL3O95164 117 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 ZNF35P13682 527 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 ALOX5APP20292 161 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 PAICSP22234 425 aaKnown RBP8.05□□□□□ -1.12
VPS35-211ENST00000569950 MYF6P23409 242 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 FMO3P31513 532 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 OTX1P32242 354 aaPredicted RBP8.05□□□□□ -1.12
VPS35-211ENST00000569950 ENTPD1P49961 510 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 ZNF83P51522 516 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 IDH3GP51553 393 aaPredicted RBP8.05□□□□□ -1.12
VPS35-211ENST00000569950 NUDT6P53370 316 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 ZNF91Q05481 1191 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 BSPH1Q075Z2 132 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 CDK5R2Q13319 367 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 IL18R1Q13478 541 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 AQP6Q13520 282 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 RAB39AQ14964 217 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 GSG1Q2KHT4 349 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 KLHL12Q53G59 568 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 TMEM255AQ5JRV8 349 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 ZNF684Q5T5D7 378 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 ZNF787Q6DD87 383 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 ZNF774Q6NX45 483 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 SSX6Q7RTT6 188 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 SLC16A14Q7RTX9 510 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 DPY19L4Q7Z388 723 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 CCDC36Q8IYA8 594 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 OR6K6Q8NGW6 343 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 SLC7A6Q92536 515 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 NEUROG1Q92886 237 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 PLEKHA8Q96JA3 519 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 POM121L2Q96KW2 1035 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 SIGLEC11Q96RL6 698 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 MRPS18AQ9NVS2 196 aaKnown RBP8.05□□□□□ -1.12
VPS35-211ENST00000569950 UBAP1Q9NZ09 502 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 KCNN3Q9UGI6 736 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 GDF2Q9UK05 429 aaPredicted RBP8.05□□□□□ -1.12
VPS35-211ENST00000569950 HSPE1-MOB4S4R3N1 261 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 DSCAMO60469 2012 aa8.05□□□□□ -1.12
VPS35-211ENST00000569950 IGHV2OR16-5A0A0B4J2B6 119 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 A6NNC1 897 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 ZNF593O00488 134 aaPredicted RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 ICMTO60725 284 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 APOL3O95236 402 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 SERPINA5P05154 406 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 MRPL3P09001 348 aaKnown RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 DBHP09172 617 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 SBK2P0C263 348 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 DBTP11182 482 aaKnown RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 CD79AP11912 226 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 CCL2P13500 99 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 CD40P25942 277 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 APEX1P27695 318 aaKnown RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 ARR3P36575 388 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 PEX19P40855 299 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 WNT5AP41221 380 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 NAA10P41227 235 aaPredicted RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 CDH11P55287 796 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 KRTAP10-9P60411 292 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 ADAM8P78325 824 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 NKX6-1P78426 367 aaPredicted RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 NAAAQ02083 359 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 MVKQ03426 396 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 SNCBQ16143 134 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 SLC36A2Q495M3 483 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 SHFQ7M4L6 423 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 PRSS45Q7RTY3 260 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 DPPA2Q7Z7J5 298 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 ZSCAN2Q7Z7L9 614 aaPredicted RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 ERI1Q8IV48 349 aaKnown RBP8.04□□□□□ -1.12
VPS35-211ENST00000569950 DEPDC4Q8N2C3 294 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 ZNF555Q8NEP9 628 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 OR4F15Q8NGB8 312 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 OTOSQ8NHW6 89 aa8.04□□□□□ -1.12
VPS35-211ENST00000569950 IGFBPL1Q8WX77 278 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms