RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 PRR23D1E9PI22 279 aaPredicted RBP14.94□□□□□ -0.02
CLN3-217ENST00000565354 DCTN6O00399 190 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 MPZL1O95297 269 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 GPANK1O95872 356 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 SERPINA5P05154 406 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 PRR23D2P0DMB1 279 aaPredicted RBP14.94□□□□□ -0.02
CLN3-217ENST00000565354 ZNF823P16415 610 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 ZNF14P17017 642 aaPredicted RBP14.94□□□□□ -0.02
CLN3-217ENST00000565354 PYCR1P32322 319 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 LSM6P62312 80 aaKnown RBP14.94□□□□□ -0.02
CLN3-217ENST00000565354 CDK5Q00535 292 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 KRTAP1-1Q07627 177 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 SCRN3Q0VDG4 424 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 ENDOGQ14249 297 aaKnown RBP14.94□□□□□ -0.02
CLN3-217ENST00000565354 TBC1D28Q2M2D7 210 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 PABPC1L2AQ5JQF8 200 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 UGT2A3Q6UWM9 527 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 SYT9Q86SS6 491 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 ZBTB46Q86UZ6 589 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 MYPOPQ86VE0 399 aaPredicted RBP14.94□□□□□ -0.02
CLN3-217ENST00000565354 SLC30A7Q8NEW0 376 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 OR4F15Q8NGB8 312 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 FBXO17Q96EF6 278 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 RIBC2Q9H4K1 309 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 CDH20Q9HBT6 801 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 FAIMQ9NVQ4 179 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 TVP23BQ9NYZ1 205 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 SPEF1Q9Y4P9 236 aa14.94□□□□□ -0.02
CLN3-217ENST00000565354 PRR14LQ5THK1 2151 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 IGHV2OR16-5A0A0B4J2B6 119 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 EI24O14681 340 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 SCG5P05408 212 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 MMP7P09237 267 aaPredicted RBP14.93□□□□□ -0.02
CLN3-217ENST00000565354 CCNOP22674 350 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 CALCRP30988 508 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 FABP6P51161 128 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 SLC25A1P53007 311 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 RAD23AP54725 363 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 TEKQ02763 1124 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 AQP6Q13520 282 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 DAG1Q14118 895 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 PTGES3Q15185 160 aaKnown RBP14.93□□□□□ -0.02
CLN3-217ENST00000565354 SNAPC1Q16533 368 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 OTPQ5XKR4 325 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 VHLLQ6RSH7 139 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 PHC2Q8IXK0 858 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 ZNF611Q8N823 705 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 OR51L1Q8NGJ5 315 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 OR6K6Q8NGW6 343 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 LILRB1Q8NHL6 650 aaPredicted RBP14.93□□□□□ -0.02
CLN3-217ENST00000565354 AKR7LQ8NHP1 331 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 EME1Q96AY2 570 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 OR2H1Q9GZK4 316 aa14.93□□□□□ -0.02
CLN3-217ENST00000565354 FAM183AA6NL82 134 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 VSTM5A8MXK1 200 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 SURF4O15260 269 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 GYPBP06028 91 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 GAAP10253 952 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 PAX1P15863 534 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 SPI1P17947 270 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 APEX1P27695 318 aaKnown RBP14.92□□□□□ -0.02
CLN3-217ENST00000565354 FMO3P31513 532 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 PSG4Q00888 419 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 DBPQ10586 325 aaPredicted RBP14.92□□□□□ -0.02
CLN3-217ENST00000565354 RCN1Q15293 331 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 KCNMB1Q16558 191 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 MEP1BQ16820 701 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 ZNF362Q5T0B9 420 aaPredicted RBP14.92□□□□□ -0.02
CLN3-217ENST00000565354 KRT80Q6KB66 452 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 FBXL14Q8N1E6 418 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 CBR4Q8N4T8 237 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 OR2AJ1Q8NGZ0 328 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 SMAP2Q8WU79 429 aaPredicted RBP14.92□□□□□ -0.02
CLN3-217ENST00000565354 TMEM171Q8WVE6 324 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 IGFBPL1Q8WX77 278 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 ZNF75AQ96N20 296 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 DHRS9Q9BPW9 319 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 OR51V1Q9H2C8 321 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 MED20Q9H944 212 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 PLEK2Q9NYT0 353 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 ASH2LQ9UBL3 628 aa14.92□□□□□ -0.02
CLN3-217ENST00000565354 TMEFF2Q9UIK5 374 aaPredicted RBP14.92□□□□□ -0.02
CLN3-217ENST00000565354 TVP23AA6NH52 213 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 E7EQL1 145 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 DOK2O60496 412 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 STOMP27105 288 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 GDI2P50395 445 aaKnown RBP14.91□□□□□ -0.02
CLN3-217ENST00000565354 ALDH3A2P51648 485 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 BLVRAP53004 296 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 RPS7P62081 194 aaKnown RBP14.91□□□□□ -0.02
CLN3-217ENST00000565354 SNTB2Q13425 540 aaKnown RBP14.91□□□□□ -0.02
CLN3-217ENST00000565354 KLHL12Q53G59 568 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 ZNF774Q6NX45 483 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 PLBD1Q6P4A8 553 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 B3GLCTQ6Y288 498 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 ZBTB49Q6ZSB9 765 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 ZNF584Q8IVC4 421 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 SLC26A10Q8NG04 563 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 DDOQ99489 341 aa14.91□□□□□ -0.02
CLN3-217ENST00000565354 WNT5BQ9H1J7 359 aa14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms