RNA–Protein interactions for RNA: ENST00000564353.5

CLK3-215, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,847 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-215ENST00000564353 SPOCK3Q9BQ16 436 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 TRAF4Q9BUZ4 470 aaPredicted RBP12.1□□□□□ -0.47
CLK3-215ENST00000564353 SUSD2Q9UGT4 822 aa12.1□□□□□ -0.47
CLK3-215ENST00000564353 IGKV3D-11A0A0A0MRZ8 115 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 TCRBV16S1A1N1A0A5B0 115 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 NUPL2O15504 423 aaKnown RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 NDUFA2O43678 99 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 TSPAN2O60636 221 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 CSRP1P21291 193 aaKnown RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 DNASE1L1P49184 302 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 RAG2P55895 527 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 HSD11B2P80365 405 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 C14orf28Q4W4Y0 310 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 GVQW1Q8N7I0 195 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 SEC22AQ96IW7 307 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 C5orf34Q96MH7 638 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 ZNF285Q96NJ3 590 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 MNTQ99583 582 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 MFRPQ9BY79 579 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 MS4A7Q9GZW8 240 aaPredicted RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 GPN1Q9HCN4 374 aaPredicted RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 MRTO4Q9UKD2 239 aaKnown RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 NPTNQ9Y639 398 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 TMEM14AQ9Y6G1 99 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 IGLV1-36A0A0B4J1U3 117 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 A0A1W2PR77 199 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 PLSCR5A0PG75 271 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 GDF9O60383 454 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 AHSA1O95433 338 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 AMY2AP04746 511 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 ANOS1P23352 680 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 RIDAP52758 137 aaKnown RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 RBMS2Q15434 407 aaKnown RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 RSPO4Q2I0M5 234 aaPredicted RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 ELFN2Q5R3F8 820 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 OLFML2AQ68BL7 652 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 OR52W1Q6IF63 320 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 SEZ6L2Q6UXD5 910 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 C3P1Q6ZMU1 363 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 RELL2Q8NC24 303 aaPredicted RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 LIPHQ8WWY8 451 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 DMRTA2Q96SC8 542 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 SOX7Q9BT81 388 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 EVA1AQ9H8M9 152 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 EXOSC3Q9NQT5 275 aaKnown RBP12.09□□□□□ -0.47
CLK3-215ENST00000564353 FGF21Q9NSA1 209 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 ARID1AO14497 2285 aa12.09□□□□□ -0.47
CLK3-215ENST00000564353 IGHV1OR21-1A0A087WYE8 117 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 UBE2QL1A1L167 161 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 LINC00862A6NCI5 91 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 NAP1L6A6NFF2 107 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 PLPP3O14495 311 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 IGF2P01344 180 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 BCKDHBP21953 392 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 CD27P26842 260 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 SGCBQ16585 318 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 STEAP1BQ6NZ63 245 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 GPAT4Q86UL3 456 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 CHST4Q8NCG5 386 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 ZNF519Q8TB69 540 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 ADAMTS18Q8TE60 1221 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 DAZLQ92904 295 aaKnown RBP12.08□□□□□ -0.48
CLK3-215ENST00000564353 ETV7Q9Y603 341 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 LOC100289279A0A1B0GTE1 492 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 TMEM269A0A1B0GVZ9 245 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 LOC107986453A0A1B0GWG9 222 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 ALG1L2C9J202 215 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 MCRIP1C9JLW8 97 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 SULT1B1O43704 296 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 PRAF2O60831 178 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 TIAF1O95411 115 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 IFI6P09912 130 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 HTR2CP28335 458 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 ZNF704Q6ZNC4 412 aaPredicted RBP12.08□□□□□ -0.48
CLK3-215ENST00000564353 SYT13Q7L8C5 426 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 OR4D6Q8NGJ1 314 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 OR1N1Q8NGS0 311 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 GSX2Q9BZM3 304 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 PTGES2Q9H7Z7 377 aa12.08□□□□□ -0.48
CLK3-215ENST00000564353 LILRA5A6NI73 299 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 METTL12A8MUP2 240 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 H3BMH7 237 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 ZNF823P16415 610 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 CDAP32320 146 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 POLR2HP52434 150 aaKnown RBP12.07□□□□□ -0.48
CLK3-215ENST00000564353 EMC4Q5J8M3 183 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 FAM74A1Q5RGS3 127 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 COMMD2Q86X83 199 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 RNF128Q8TEB7 428 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 FGGYQ96C11 551 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 TXNIPQ9H3M7 391 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 SEC61A2Q9H9S3 476 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 OPN4Q9UHM6 478 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 TMEM131Q92545 1883 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 A8MVM7 634 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 LMO7DNF2Z398 122 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 SLC17A2O00624 439 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 GUSBP08236 651 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 KLK2P20151 261 aa12.07□□□□□ -0.48
CLK3-215ENST00000564353 SLC6A8P48029 635 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms