RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CMBLQ96DG6 245 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 PATZ1Q9HBE1 687 aaKnown RBP14.21□□□□□ -0.13
CLN3-211ENST00000564091 POLE4Q9NR33 117 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 NUP50Q9UKX7 468 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 NDRG4Q9ULP0 352 aaKnown RBP14.21□□□□□ -0.13
CLN3-211ENST00000564091 SNX13Q9Y5W8 968 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 AUP1Q9Y679 476 aa14.21□□□□□ -0.13
CLN3-211ENST00000564091 DYSFO75923 2080 aa14.21□□□□□ -0.14
CLN3-211ENST00000564091 PKD1L1Q8TDX9 2849 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 LOC100653049A0A140TA62 436 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 A6NIZ1 184 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 J3KTA2 159 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 MRASO14807 208 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 TMPRSS2O15393 492 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 KRT34O76011 436 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 GSTM3P21266 225 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 PRTN3P24158 256 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 SLC6A9P48067 706 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 ERFP50548 548 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 RAP1BP61224 184 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 RAP1AP62834 184 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 SF3A3Q12874 501 aaKnown RBP eCLIP14.2□□□□□ -0.14
CLN3-211ENST00000564091 ZMYND11Q15326 602 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 TUSC1Q2TAM9 212 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 ARMCX4Q5H9R4 360 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 DOK3Q7L591 496 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 ZER1Q7Z7L7 766 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 SYT9Q86SS6 491 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 OAFQ86UD1 273 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 LRRC28Q86X40 367 aaPredicted RBP14.2□□□□□ -0.14
CLN3-211ENST00000564091 KLHL36Q8N4N3 616 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 ZNF283Q8N7M2 679 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 OR13C2Q8NGS9 318 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 ITLN1Q8WWA0 313 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 SAMD8Q96LT4 415 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 PRRC1Q96M27 445 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 C1orf147Q96MC9 270 aaPredicted RBP14.2□□□□□ -0.14
CLN3-211ENST00000564091 TMEM120AQ9BXJ8 343 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 MAN2C1Q9NTJ4 1040 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 TBCCD1Q9NVR7 557 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 STARD10Q9Y365 291 aa14.2□□□□□ -0.14
CLN3-211ENST00000564091 ARHGAP32A7KAX9 2087 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 DNAJC9-AS1A6NH13 148 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 EFCAB9A8MZ26 197 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 HMGB1P1B2RPK0 211 aaPredicted RBP14.19□□□□□ -0.14
CLN3-211ENST00000564091 ZNF12P17014 697 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 TNFSF4P23510 183 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 IFNA8P32881 189 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 HTR5AP47898 357 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 BTG1P62324 171 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 SELENOWP63302 87 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 FOXL1Q12952 345 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 TMEM155Q4W5P6 130 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 FAM205BPQ63HN1 556 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 C1orf94Q6P1W5 598 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 VTCN1Q7Z7D3 282 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 SLC7A6Q92536 515 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 TAF15Q92804 592 aaKnown RBP eCLIP14.19□□□□□ -0.14
CLN3-211ENST00000564091 ZNF48Q96MX3 618 aaPredicted RBP14.19□□□□□ -0.14
CLN3-211ENST00000564091 SIGLEC11Q96RL6 698 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 SIKE1Q9BRV8 207 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 PLEK2Q9NYT0 353 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 GMPR2Q9P2T1 348 aaKnown RBP14.19□□□□□ -0.14
CLN3-211ENST00000564091 ADAM18Q9Y3Q7 739 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 INSIG2Q9Y5U4 225 aa14.19□□□□□ -0.14
CLN3-211ENST00000564091 HTR3EA5X5Y0 456 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 FAM220BPB1ANY3 271 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 FFAR1O14842 300 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 SGCEO43556 437 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 DOK2O60496 412 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 TNFRSF1AP19438 455 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 KITLGP21583 273 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 RPL4P36578 427 aaKnown RBP14.18□□□□□ -0.14
CLN3-211ENST00000564091 PRKCDQ05655 676 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 SCRN3Q0VDG4 424 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 KLF10Q13118 480 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 BAMBIQ13145 260 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 COQ5Q5HYK3 327 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 PRR31Q5SQ13 230 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 TBPL2Q6SJ96 375 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 SHISA2Q6UWI4 295 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 VASH1Q7L8A9 365 aaPredicted RBP14.18□□□□□ -0.14
CLN3-211ENST00000564091 NPEPL1Q8NDH3 523 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 OR2T12Q8NG77 320 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 Q96M85 177 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 FNDC11Q9BVV2 318 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 PPP1R3CQ9UQK1 317 aa14.18□□□□□ -0.14
CLN3-211ENST00000564091 POLR3KQ9Y2Y1 108 aaPredicted RBP14.18□□□□□ -0.14
CLN3-211ENST00000564091 SOX21Q9Y651 276 aaPredicted RBP14.18□□□□□ -0.14
CLN3-211ENST00000564091 IGHV3OR16-10A0A075B7F0 116 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 F5H0A9 414 aaPredicted RBP14.17□□□□□ -0.14
CLN3-211ENST00000564091 ZNF205O95201 554 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 NPPAP01160 153 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 COX5BP10606 129 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 CTLA4P16410 223 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 ZNF26P17031 533 aaPredicted RBP14.17□□□□□ -0.14
CLN3-211ENST00000564091 SLC9A3P48764 834 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 TRAM2Q15035 370 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 JAZF1Q86VZ6 243 aa14.17□□□□□ -0.14
CLN3-211ENST00000564091 OFCC1Q8IZS5 231 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms