RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 ZNF304Q9HCX3 659 aa11.55□□□□□ -0.56
LDLR-207ENST00000558013 APMAPQ9HDC9 416 aa11.55□□□□□ -0.56
LDLR-207ENST00000558013 PRMT8Q9NR22 394 aaPredicted RBP11.55□□□□□ -0.56
LDLR-207ENST00000558013 SDHAF2Q9NX18 166 aa11.55□□□□□ -0.56
LDLR-207ENST00000558013 RABL2AQ9UBK7 228 aaPredicted RBP11.55□□□□□ -0.56
LDLR-207ENST00000558013 RABL2BQ9UNT1 228 aa11.55□□□□□ -0.56
LDLR-207ENST00000558013 H3BML4 177 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 P2RY10O00398 339 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 TPD52L2O43399 206 aaKnown RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 FADS1O60427 444 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 RIDAP52758 137 aaKnown RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 FOXK1P85037 733 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 OR7A5Q15622 319 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 LIN54Q6MZP7 749 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 GVQW1Q8N7I0 195 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 RELL2Q8NC24 303 aaPredicted RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 OR13C3Q8NGS6 347 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 ZDHHC12Q96GR4 267 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 LMAN1LQ9HAT1 526 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 MED11Q9P086 117 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 MRTO4Q9UKD2 239 aaKnown RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 CA14Q9ULX7 337 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 LOC107986453A0A1B0GWG9 222 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 A8MVM7 634 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 F5H5P2 479 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 MS4A18H0YCH9 400 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 CCSO14618 274 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 KCNAB3O43448 404 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 AMY2AP04746 511 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 FBLP22087 321 aaKnown RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 FAUP35544 74 aaKnown RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 POLR2HP52434 150 aaKnown RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 EPHA4P54764 986 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 INPP5JQ15735 1006 aaPredicted RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 MS4A18Q3C1V0 323 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 LRRC37A5PQ49AS3 106 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 FAM69BQ5VUD6 431 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 TSSK4Q6SA08 328 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 OR1N1Q8NGS0 311 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 SPACA5Q96QH8 159 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.54□□□□□ -0.56
LDLR-207ENST00000558013 MMACHCQ9Y4U1 282 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 FRYQ5TBA9 3013 aa11.54□□□□□ -0.56
LDLR-207ENST00000558013 PHF3Q92576 2039 aaKnown RBP11.53□□□□□ -0.56
LDLR-207ENST00000558013 RAB3DO95716 219 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 HSD11B2P80365 405 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 ROM1Q03395 351 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 OR52W1Q6IF63 320 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 FDX2Q6P4F2 183 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 OR1J2Q8NGS2 313 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 OR52N5Q8NH56 324 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SLC41A2Q96JW4 573 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 FOXQ1Q9C009 403 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 VSX1Q9NZR4 365 aaPredicted RBP11.53□□□□□ -0.56
LDLR-207ENST00000558013 COPS7AQ9UBW8 275 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SUSD2Q9UGT4 822 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 IGHV1OR21-1A0A087WYE8 117 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 B8ZZF3 427 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 POU3F1Q03052 451 aaPredicted RBP11.53□□□□□ -0.56
LDLR-207ENST00000558013 GLO1Q04760 184 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 C14orf28Q4W4Y0 310 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 BEX5Q5H9J7 111 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 LY6G6FQ5SQ64 297 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SLC29A4Q7RTT9 530 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 STPG2Q8N412 459 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SLC38A9Q8NBW4 561 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 DAZLQ92904 295 aaKnown RBP11.53□□□□□ -0.56
LDLR-207ENST00000558013 SEC22AQ96IW7 307 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 TMEM185BQ9H7F4 350 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 PTGES2Q9H7Z7 377 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 G6PC2Q9NQR9 355 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SLC22A11Q9NSA0 550 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 KLK13Q9UKR3 277 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SDK2Q58EX2 2172 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 TMEM269A0A1B0GVZ9 245 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 hCG_1807616A0A1W2PRN6 198 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 NUPL2O15504 423 aaKnown RBP11.53□□□□□ -0.56
LDLR-207ENST00000558013 AHSA1O95433 338 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 OR4E1P0C645 316 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 PPP3CBP16298 524 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 CD27P26842 260 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 FAM74A1Q5RGS3 127 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 RGS7BPQ6MZT1 257 aaPredicted RBP11.53□□□□□ -0.56
LDLR-207ENST00000558013 SYT13Q7L8C5 426 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 C17orf82Q86X59 251 aaPredicted RBP11.53□□□□□ -0.56
LDLR-207ENST00000558013 MARVELD3Q96A59 401 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 MNTQ99583 582 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SLC6A7Q99884 636 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SOX7Q9BT81 388 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 SLC5A6Q9Y289 635 aa11.53□□□□□ -0.56
LDLR-207ENST00000558013 NUP210LQ5VU65 1888 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 FTCDNL1E5RQL4 147 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 LMO7DNF2Z398 122 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 EIF4E2O60573 245 aaKnown RBP11.52□□□□□ -0.56
LDLR-207ENST00000558013 SRSF10O75494 262 aaKnown RBP11.52□□□□□ -0.56
LDLR-207ENST00000558013 RLN2P04090 185 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 GABRA1P14867 456 aa11.52□□□□□ -0.56
LDLR-207ENST00000558013 IGFBP3P17936 291 aaPredicted RBP11.52□□□□□ -0.56
LDLR-207ENST00000558013 DNASE1L1P49184 302 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 75.3 ms