RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 TMEM106AQ96A25 262 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 INTS12Q96CB8 462 aaKnown RBP14.97□□□□□ -0.01
LDLR-206ENST00000557958 AGAP4Q96P64 663 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 SEC61A2Q9H9S3 476 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 RABL2AQ9UBK7 228 aaPredicted RBP14.97□□□□□ -0.01
LDLR-206ENST00000557958 CYB5R1Q9UHQ9 305 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 RABL2BQ9UNT1 228 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 AK6Q9Y3D8 172 aaKnown RBP14.97□□□□□ -0.01
LDLR-206ENST00000557958 V9GY05 133 aa14.97□□□□□ -0.01
LDLR-206ENST00000557958 A0A1W2PQ09 198 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 EFSO43281 561 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 RAMP1O60894 148 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 QDPRP09417 244 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 POU3F2P20265 443 aaPredicted RBP14.96□□□□□ -0.01
LDLR-206ENST00000557958 ENPP1P22413 925 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 DCTDP32321 178 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 SOX2P48431 317 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 INPP1P49441 399 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 CARD18P57730 90 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 OR1C1Q15619 314 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 CEP78Q5JTW2 689 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 OTPQ5XKR4 325 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 ZNF704Q6ZNC4 412 aaPredicted RBP14.96□□□□□ -0.01
LDLR-206ENST00000557958 CREB3L2Q70SY1 520 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 RHOUQ7L0Q8 258 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 CATSPERDQ86XM0 798 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 LINC00346Q8IVM7 164 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 WDFY1Q8IWB7 410 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 ZNF433Q8N7K0 673 aaPredicted RBP14.96□□□□□ -0.01
LDLR-206ENST00000557958 SIGLEC12Q96PQ1 595 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 DEPPQ9NTK1 212 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 GLTPQ9NZD2 209 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 SPATA2Q9UM82 520 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 MSRB2Q9Y3D2 182 aa14.96□□□□□ -0.01
LDLR-206ENST00000557958 TRBV5-7A0A0A0MS05 114 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 ANXA2P2A6NMY6 339 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 IFITM5A6NNB3 132 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 EIF1AYO14602 144 aaKnown RBP14.95□□□□□ -0.02
LDLR-206ENST00000557958 NEURL1O76050 574 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 ANXA2P07355 339 aaKnown RBP14.95□□□□□ -0.02
LDLR-206ENST00000557958 CSF3P09919 207 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 ATF1P18846 271 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 PITPNBP48739 271 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 ASAH1Q13510 395 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 KCNMB1Q16558 191 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 STAC2Q6ZMT1 411 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 AKAP14Q86UN6 197 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 OR2M7Q8NG81 312 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 SLC25A18Q9H1K4 315 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 NIPAL2Q9H841 368 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 B3GAT2Q9NPZ5 323 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 CENPMQ9NSP4 180 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 CKLFQ9UBR5 152 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 MALT1Q9UDY8 824 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 WASF3Q9UPY6 502 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 DHDHQ9UQ10 334 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 EML6Q6ZMW3 1958 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 A0A1B0GTH9 108 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 RFPL3SP0C7P2 107 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 NR4A2P43354 598 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 TPTEP56180 551 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 FOXO1Q12778 655 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 SLC39A7Q92504 469 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 SLAMF6Q96DU3 332 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 SLC22A4Q9H015 551 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 TBC1D24Q9ULP9 559 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 EMC9Q9Y3B6 208 aa14.95□□□□□ -0.02
LDLR-206ENST00000557958 TMEM269A0A1B0GVZ9 245 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 PAHP00439 452 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 HLA-DQB1P01920 261 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 EIF4EP06730 217 aaKnown RBP14.94□□□□□ -0.02
LDLR-206ENST00000557958 UBCP0CG48 685 aaKnown RBP14.94□□□□□ -0.02
LDLR-206ENST00000557958 MMP16P51512 607 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 PITPNAQ00169 270 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 ODF4Q2M2E3 257 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 UBE2NLQ5JXB2 153 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 WIPI1Q5MNZ9 446 aaPredicted RBP14.94□□□□□ -0.02
LDLR-206ENST00000557958 BCL2L15Q5TBC7 163 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 TMEM244Q5VVB8 128 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 TMEM53Q6P2H8 277 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 SYT9Q86SS6 491 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 OR2V1Q8NHB1 315 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 OR2M2Q96R28 347 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 UCN2Q96RP3 112 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 HES7Q9BYE0 225 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 OR52A1Q9UKL2 312 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 HHLA2Q9UM44 414 aa14.94□□□□□ -0.02
LDLR-206ENST00000557958 KLF13Q9Y2Y9 288 aaPredicted RBP14.94□□□□□ -0.02
LDLR-206ENST00000557958 SPTBN2O15020 2390 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 IGHV3-15A0A0B4J1V0 119 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 ZNF878C9JN71 531 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 PNPP00491 289 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 ISG15P05161 165 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 CALCBP10092 127 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 SNRPBP14678 240 aaKnown RBP14.93□□□□□ -0.02
LDLR-206ENST00000557958 ACHEP22303 614 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 ID4P47928 161 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 SCAND1P57086 179 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 ARG2P78540 354 aa14.93□□□□□ -0.02
LDLR-206ENST00000557958 MFGE8Q08431 387 aaPredicted RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms