RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ARL5BQ96KC2 179 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 CHCHD6Q9BRQ6 235 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 WDR12Q9GZL7 423 aaKnown RBP10.94□□□□□ -0.66
SHMT2-230ENST00000557427 NXF2Q9GZY0 626 aaKnown RBP10.94□□□□□ -0.66
SHMT2-230ENST00000557427 MMP27Q9H306 513 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 CHODLQ9H9P2 273 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 BARX1Q9HBU1 254 aaPredicted RBP10.94□□□□□ -0.66
SHMT2-230ENST00000557427 HMG20AQ9NP66 347 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 FANCFQ9NPI8 374 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 AKIP1Q9NQ31 210 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 KLHL13Q9P2N7 655 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 CHRNA9Q9UGM1 479 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 IL20RAQ9UHF4 553 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 STUB1Q9UNE7 303 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 B3GALT5Q9Y2C3 310 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 TMED7Q9Y3B3 224 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 RNF115Q9Y4L5 304 aa10.94□□□□□ -0.66
SHMT2-230ENST00000557427 CADP27708 2225 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 LOC100506127A0A0U1RQW1 187 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 TMEM72A0PK05 275 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 SLC22A31A6NKX4 558 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 RIIAD1A6NNX1 92 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 PRR23D1E9PI22 279 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-230ENST00000557427 J3QRE1 110 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 SMAD9O15198 467 aaKnown RBP10.93□□□□□ -0.66
SHMT2-230ENST00000557427 GPX5O75715 221 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 OR7A10O76100 309 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 PRR23D2P0DMB1 279 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF3P17036 446 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 PSMA1P25786 263 aaKnown RBP10.93□□□□□ -0.66
SHMT2-230ENST00000557427 OPRL1P41146 370 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 SLC1A3P43003 542 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 HTR3AP46098 478 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 POLR2HP52434 150 aaKnown RBP10.93□□□□□ -0.66
SHMT2-230ENST00000557427 CSNK2A1P68400 391 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-230ENST00000557427 TPBGQ13641 420 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 ANKDD1AQ495B1 522 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 NCMAPQ5T1S8 102 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 PLBD1Q6P4A8 553 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 PAQR6Q6TCH4 344 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF485Q8NCK3 441 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 BBS1Q8NFJ9 593 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 OR52N1Q8NH53 320 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 OR51A7Q8NH64 312 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 SLC25A43Q8WUT9 341 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-230ENST00000557427 CENPOQ9BU64 300 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 ACTR6Q9GZN1 396 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 INPP5EQ9NRR6 644 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 KLHL9Q9P2J3 617 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 KLHL21Q9UJP4 597 aa10.93□□□□□ -0.66
SHMT2-230ENST00000557427 ING1Q9UK53 422 aaPredicted RBP10.93□□□□□ -0.66
SHMT2-230ENST00000557427 IGKV1D-42A0A075B6H8 117 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 TCF21O43680 179 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 IDH3BO43837 385 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 CYTIPO60759 359 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 PPP1R3DO95685 299 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 PAICSP22234 425 aaKnown RBP10.92□□□□□ -0.66
SHMT2-230ENST00000557427 SLC2A5P22732 501 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 CXCR1P25024 350 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 TGFBR1P36897 503 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 CRYBB2P43320 205 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 DEFA6Q01524 100 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 ITGADQ13349 1161 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF404Q494X3 552 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF362Q5T0B9 420 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-230ENST00000557427 TFAP2EQ6VUC0 442 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 DPY19L2P2Q6ZN68 376 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 DTX2Q86UW9 622 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF100Q8IYN0 542 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 KLHL36Q8N4N3 616 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 RFLNBQ8N5W9 214 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF525Q8N782 197 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 SLC37A3Q8NCC5 494 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 OR4F15Q8NGB8 312 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 MCFD2Q8NI22 146 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 HTRA1Q92743 480 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 DDIT4LQ96D03 193 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 GPX7Q96SL4 187 aaPredicted RBP10.92□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF649Q9BS31 505 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 ERVK13-1Q9NX77 482 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 HAO2Q9NYQ3 351 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 PRSS50Q9UI38 385 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 KCNS2Q9ULS6 477 aa10.92□□□□□ -0.66
SHMT2-230ENST00000557427 PRKDCP78527 4128 aaKnown RBP10.92□□□□□ -0.66
SHMT2-230ENST00000557427 ZC3H12DA2A288 527 aaKnown RBP10.91□□□□□ -0.66
SHMT2-230ENST00000557427 CCDC182A6NF36 153 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 FAM183AA6NL82 134 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 ZNF814B7Z6K7 855 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 ARPC3O15145 178 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 TSPAN19P0C672 248 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 EDNRAP25101 427 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 FKBP2P26885 142 aaKnown RBP10.91□□□□□ -0.66
SHMT2-230ENST00000557427 PRPS1P60891 318 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 BDH1Q02338 343 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 SLC35F1Q5T1Q4 408 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 OR2G6Q5TZ20 316 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 HIST2H2BDQ6DRA6 164 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 CLEC2AQ6UVW9 174 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 ACBD7Q8N6N7 88 aa10.91□□□□□ -0.66
SHMT2-230ENST00000557427 UFD1Q92890 307 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms