RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 PYCARD-AS1I3L0S3 204 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 ZNF208O43345 1280 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 ZNF432O94892 652 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 P2RX1P51575 399 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 TMEM65Q6PI78 240 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 ASH2LQ9UBL3 628 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 MOKQ9UQ07 419 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 S100A6P06703 90 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 RAB40ALP0C0E4 278 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 AKAIN1P0CW23 69 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 STEAP1BQ6NZ63 245 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 TMEM81Q6P7N7 255 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 PTPMT1Q8WUK0 201 aaPredicted RBP13.41□□□□□ -0.26
CUX1-215ENST00000556210 RAB40AQ8WXH6 277 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 DDIT4LQ96D03 193 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 ZNF416Q9BWM5 594 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 PLEK2Q9NYT0 353 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 FBXO4Q9UKT5 387 aa13.41□□□□□ -0.26
CUX1-215ENST00000556210 LOC107986453A0A1B0GWG9 222 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 PRSS37A4D1T9 235 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 LMO7DNF2Z398 122 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 RLN2P04090 185 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 MESTQ5EB52 335 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 PPP1R3BQ86XI6 285 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 SCARB1Q8WTV0 552 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 DCBLD2Q96PD2 775 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 WWTR1Q9GZV5 400 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 TCRBV16S1A1N1A0A5B0 115 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 GIPP09681 153 aaPredicted RBP13.4□□□□□ -0.26
CUX1-215ENST00000556210 ZNF806P0C7X5 589 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 SULT1A3P0DMM9 295 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 SULT1A4P0DMN0 295 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 NME1P15531 152 aaKnown RBP13.4□□□□□ -0.26
CUX1-215ENST00000556210 CD34P28906 385 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 MGAT2Q10469 447 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 SLC9A3R2Q15599 337 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 OVCH1Q7RTY7 1134 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 PNLDC1Q8NA58 520 aaKnown RBP13.4□□□□□ -0.26
CUX1-215ENST00000556210 CXorf58Q96LI9 332 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 STEAP1Q9UHE8 339 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 FREM3P0C091 2139 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 TEX13DA0A0J9YY54 714 aaPredicted RBP13.4□□□□□ -0.26
CUX1-215ENST00000556210 IL11P20809 199 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 CLDN17P56750 224 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 ADGRG3Q86Y34 549 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 OR51A2Q8NGJ7 313 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 RNASE11Q8TAA1 199 aaKnown RBP13.4□□□□□ -0.26
CUX1-215ENST00000556210 TOMM40LQ969M1 308 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 OR52A1Q9UKL2 312 aa13.4□□□□□ -0.26
CUX1-215ENST00000556210 RBM7Q9Y580 266 aaKnown RBP13.4□□□□□ -0.26
CUX1-215ENST00000556210 MPC2O95563 127 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 TMEM225BP0DP42 221 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 SERPINA2P20848 420 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 ENPP1P22413 925 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 EFNB2P52799 333 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 RBMS2Q15434 407 aaKnown RBP13.39□□□□□ -0.27
CUX1-215ENST00000556210 OR5L2Q8NGL0 311 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 OR51E1Q8TCB6 317 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 KISS1RQ969F8 398 aaPredicted RBP13.39□□□□□ -0.27
CUX1-215ENST00000556210 TOR1AO14656 332 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 SNAPC5O75971 98 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 SMIM10L1P0DMW3 83 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 SPINK2P20155 84 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 PVALBP20472 110 aaPredicted RBP13.39□□□□□ -0.27
CUX1-215ENST00000556210 GABRR1P24046 479 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 CCR5P51681 352 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 LIMK1P53667 647 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 IL13RA1P78552 427 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 TUSC1Q2TAM9 212 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 TDHQ8IZJ6 230 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 ZNF615Q8N8J6 731 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 OR4C16Q8NGL9 310 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 FBXW5Q969U6 566 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 SMIM10Q96HG1 83 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 DOCK7Q96N67 2140 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 ASF1BQ9NVP2 202 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 TAS2R8Q9NYW2 309 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 IL33O95760 270 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 AMY2BP19961 511 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 SLC37A1P57057 533 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 ACTBP60709 375 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 ACTG1P63261 375 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 STK11Q15831 433 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 SLC35D3Q5M8T2 416 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 FAM74A1Q5RGS3 127 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 OR52W1Q6IF63 320 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 CMIPQ8IY22 773 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 OR5T2Q8NGG2 359 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 UBE2ZQ9H832 354 aaPredicted RBP13.39□□□□□ -0.27
CUX1-215ENST00000556210 MPDZO75970 2070 aa13.39□□□□□ -0.27
CUX1-215ENST00000556210 SZT2Q5T011 3432 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 MASP2O00187 686 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 AGPAT2O15120 278 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 PMP2P02689 132 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 RFC3P40938 356 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 AKR1C2P52895 323 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 MRPS10P82664 201 aaKnown RBP13.38□□□□□ -0.27
CUX1-215ENST00000556210 AKR1C1Q04828 323 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 FOXF1Q12946 379 aa13.38□□□□□ -0.27
CUX1-215ENST00000556210 FHL5Q5TD97 284 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms