RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 PNPLA2Q96AD5 504 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 ZNF385AQ96PM9 386 aaKnown RBP13.05□□□□□ -0.32
VPS33B-205ENST00000556096 HES7Q9BYE0 225 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 C1orf198Q9H425 327 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 TIGARQ9NQ88 270 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 R4GMQ9 66 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 FREM3P0C091 2139 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 A0A087WV48 116 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 ACOD1A6NK06 481 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 KLRC4-KLRK1H3BQV0 150 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 EFSO43281 561 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 GLSO94925 669 aaPredicted RBP13.05□□□□□ -0.32
VPS33B-205ENST00000556096 WNT11O96014 354 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 PNPP00491 289 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 STARP49675 285 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 CLDN15P56746 228 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 SLC25A35Q3KQZ1 300 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 FOXL2NBQ6ZUU3 175 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 SPATC1Q76KD6 591 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 IL17RDQ8NFM7 739 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 OR10D3Q8NH80 312 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 TTTY12Q9BZ98 90 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.05□□□□□ -0.32
VPS33B-205ENST00000556096 SEC61A2Q9H9S3 476 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 FAIMQ9NVQ4 179 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 ABRACLQ9P1F3 81 aa13.05□□□□□ -0.32
VPS33B-205ENST00000556096 URB1O60287 2271 aaKnown RBP13.04□□□□□ -0.32
VPS33B-205ENST00000556096 CXCL13O43927 109 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 H2BFMP0C1H6 154 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 CD46P15529 392 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 RIN1Q13671 783 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 ABLIM2Q6H8Q1 611 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 CNIH2Q6PI25 160 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 LRRC28Q86X40 367 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-205ENST00000556096 HIST2H2ABQ8IUE6 130 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-205ENST00000556096 OR6N1Q8NGY5 312 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 CPNE4Q96A23 557 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-205ENST00000556096 SLAMF6Q96DU3 332 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 SLITRK2Q9H156 845 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 PPP1R3EQ9H7J1 279 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 SP140LQ9H930 580 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 B3GAT2Q9NPZ5 323 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 POLE4Q9NR33 117 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 CYSLTR2Q9NS75 346 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 TBCCD1Q9NVR7 557 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 FOXD3Q9UJU5 478 aaPredicted RBP13.04□□□□□ -0.32
VPS33B-205ENST00000556096 RCE1Q9Y256 329 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 AK6Q9Y3D8 172 aaKnown RBP13.04□□□□□ -0.32
VPS33B-205ENST00000556096 LHFPL6Q9Y693 200 aa13.04□□□□□ -0.32
VPS33B-205ENST00000556096 ZNF716A6NP11 495 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 RRP8O43159 456 aaKnown RBP13.03□□□□□ -0.32
VPS33B-205ENST00000556096 ATF1P18846 271 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 MAGEB1P43366 347 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 MMP16P51512 607 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 DEFA1P59665 94 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 DEFA3P59666 94 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 LSM6P62312 80 aaKnown RBP13.03□□□□□ -0.32
VPS33B-205ENST00000556096 MFGE8Q08431 387 aaPredicted RBP13.03□□□□□ -0.32
VPS33B-205ENST00000556096 CORO6Q6QEF8 472 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 GALNTL5Q7Z4T8 443 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 C20orf196Q8IYI0 205 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 UBQLNLQ8IYU4 475 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 OR8H2Q8N162 312 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 TMEM251Q8N6I4 163 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 OR2AJ1Q8NGZ0 328 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 ZNF552Q9H707 407 aaPredicted RBP13.03□□□□□ -0.32
VPS33B-205ENST00000556096 TCF7L1Q9HCS4 588 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 GDF2Q9UK05 429 aaPredicted RBP13.03□□□□□ -0.32
VPS33B-205ENST00000556096 SLC22A13Q9Y226 551 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 FLVCR1Q9Y5Y0 555 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 KIAA1549Q9HCM3 1950 aa13.03□□□□□ -0.32
VPS33B-205ENST00000556096 MED12Q93074 2177 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 hCG_2014768A0A024R1R8 64 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 A6NL46 340 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 MAGEB3O15480 346 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 ISG15P05161 165 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 SLC2A2P11168 524 aaPredicted RBP13.02□□□□□ -0.32
VPS33B-205ENST00000556096 ELK1P19419 428 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 NPR2P20594 1047 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 CDAP32320 146 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 EIF1AXP47813 144 aaKnown RBP13.02□□□□□ -0.32
VPS33B-205ENST00000556096 SOX2P48431 317 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 MEOX1P50221 254 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 LHX2P50458 406 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 PLGLB1Q02325 96 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 STAC2Q6ZMT1 411 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 SYT9Q86SS6 491 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 SLC22A16Q86VW1 577 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 RDH10Q8IZV5 341 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 POC5Q8NA72 575 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 ZFP62Q8NB50 900 aaPredicted RBP13.02□□□□□ -0.32
VPS33B-205ENST00000556096 OR10S1Q8NGN2 331 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 OR10AC1Q8NH08 325 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 SETD6Q8TBK2 473 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 TRMT10AQ8TBZ6 339 aaKnown RBP13.02□□□□□ -0.32
VPS33B-205ENST00000556096 SCMH1Q96GD3 660 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 CMTM3Q96MX0 182 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 GFI1Q99684 422 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 NIPAL2Q9H841 368 aa13.02□□□□□ -0.32
VPS33B-205ENST00000556096 EMC7Q9NPA0 242 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms