RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 LIPAP38571 399 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 CDKN2AP42771 156 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 TMEM33P57088 247 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 TRIM25Q14258 630 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 GK3PQ14409 553 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 CARTPTQ16568 116 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 RPL13AP3Q6NVV1 102 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 ZNF774Q6NX45 483 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 PTCHD4Q6ZW05 846 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 RFPL4BQ6ZWI9 263 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 NPEPL1Q8NDH3 523 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 GNPDA2Q8TDQ7 276 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 IPCEF1Q8WWN9 437 aaPredicted RBP13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 NUAK2Q9H093 628 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 RACGAP1Q9H0H5 632 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 CYSLTR2Q9NS75 346 aa13.71□□□□□ -0.21
CCDC88C-209ENST00000554872 ATRQ13535 2644 aa13.71□□□□□ -0.22
CCDC88C-209ENST00000554872 IGLV1-36A0A0B4J1U3 117 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 OR6C6A6NF89 314 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 SOCS2O14508 198 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 SGCEO43556 437 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 SLC16A7O60669 478 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 NCR1O76036 304 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 HPXP02790 462 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 GAAP10253 952 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 NAT2P11245 290 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 ZNF16P17020 682 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 MMP15P51511 669 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 ARHGDIAP52565 204 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 HIST1H3AP68431 136 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 CHRFAM7AQ494W8 412 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 HIST2H3PS2Q5TEC6 136 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 ZNF770Q6IQ21 691 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 FAM166AQ6J272 317 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 PGBD2Q6P3X8 592 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 HIST2H3AQ71DI3 136 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 VASH1Q7L8A9 365 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 DHFR2Q86XF0 187 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 OR4C15Q8NGM1 316 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 KLF14Q8TD94 323 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 MSI2Q96DH6 328 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 ASB9Q96DX5 294 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 C4orf45Q96LM5 186 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 COG8Q96MW5 612 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 ERMAPQ96PL5 475 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 EMC7Q9NPA0 242 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 IL20RAQ9UHF4 553 aa13.7□□□□□ -0.22
CCDC88C-209ENST00000554872 DOK2O60496 412 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 PPP1R3DO95685 299 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 FAM157CP0CG43 387 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 HOXB6P17509 224 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 CCNOP22674 350 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 GCH1P30793 250 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 PPP1CBP62140 327 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 TMEM154Q6P9G4 183 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 CYP2R1Q6VVX0 501 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 ZBTB46Q86UZ6 589 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 SLC25A40Q8TBP6 338 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 DCLRE1CQ96SD1 692 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 DIRC2Q96SL1 478 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 OR51B6Q9H340 312 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 IL20Q9NYY1 176 aa13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 COA3Q9Y2R0 106 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-209ENST00000554872 LMX1BO60663 402 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 CD55P08174 381 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 THBS2P35442 1172 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 CRYBB2P43320 205 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 HTR5AP47898 357 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 TEKQ02763 1124 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 GLO1Q04760 184 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 COX10Q12887 443 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 ZMAT1Q5H9K5 638 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 TMEM255AQ5JRV8 349 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 RINLQ6ZS11 566 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 SLC26A10Q8NG04 563 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 ABHD4Q8TB40 342 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 YIPF5Q969M3 257 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 BTBD10Q9BSF8 475 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 OR2J1Q9GZK6 312 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 HDHD2Q9H0R4 259 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 TAS2R1Q9NYW7 299 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 ASH2LQ9UBL3 628 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 KLHL21Q9UJP4 597 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 KCNS2Q9ULS6 477 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 CDH10Q9Y6N8 788 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 MALRD1Q5VYJ5 2156 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 MXRA5Q9NR99 2828 aa13.68□□□□□ -0.22
CCDC88C-209ENST00000554872 LOC100289279A0A1B0GTE1 492 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 LYNX1G3V0Z9 82 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 TNFRSF11BO00300 401 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 DCTN6O00399 190 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 ABHD16AO95870 558 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 RENP00797 406 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 NGFP01138 241 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 TFP02787 698 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 LYNX1P0DP58 116 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 HIST1H1CP16403 213 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 GSTM3P21266 225 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 MPV17P39210 176 aa13.67□□□□□ -0.22
CCDC88C-209ENST00000554872 MAGEB1P43366 347 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms