RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 NPTX1Q15818 432 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 HHATQ5VTY9 493 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 ZER1Q7Z7L7 766 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 RANBP3LQ86VV4 465 aaPredicted RBP10.69□□□□□ -0.7
VPS29-211ENST00000553128 LDLRAD3Q86YD5 345 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 OR5AS1Q8N127 324 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 CLDN22Q8N7P3 220 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 MEGF10Q96KG7 1140 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 PAIP1Q9H074 479 aaKnown RBP10.69□□□□□ -0.7
VPS29-211ENST00000553128 SEMA6AQ9H2E6 1030 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 ELOVL3Q9HB03 270 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 SIGLEC9Q9Y336 463 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 STARD10Q9Y365 291 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 NOTCH3Q9UM47 2321 aa10.69□□□□□ -0.7
VPS29-211ENST00000553128 IGHV1-69DA0A0B4J2H0 117 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 ZNF879B4DU55 563 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 CLIC1O00299 241 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 P2RY10O00398 339 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 TSPAN9O75954 239 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 IGHV1-69P01742 117 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 UMPSP11172 480 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 FUT4P22083 530 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 CPT2P23786 658 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 EPHA3P29320 983 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 AQP1P29972 269 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 SLC1A6P48664 564 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 RPL18Q07020 188 aaKnown RBP10.68□□□□□ -0.7
VPS29-211ENST00000553128 C6orf10Q5SRN2 563 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 SWT1Q5T5J6 900 aaKnown RBP10.68□□□□□ -0.7
VPS29-211ENST00000553128 DHRS7BQ6IAN0 325 aaPredicted RBP10.68□□□□□ -0.7
VPS29-211ENST00000553128 GDPGP1Q6ZNW5 385 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 MOGAT3Q86VF5 341 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 ATG16L2Q8NAA4 619 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 OR9I1Q8NGQ6 314 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 SGCDQ92629 289 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 GTF2H4Q92759 462 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 HDAC2Q92769 488 aaKnown RBP10.68□□□□□ -0.7
VPS29-211ENST00000553128 LHX4Q969G2 390 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 PPP1R14AQ96A00 147 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 ITCHQ96J02 903 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 MCHR1Q99705 422 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 SLCO1B3Q9NPD5 702 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 NECAP2Q9NVZ3 263 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 CTSZQ9UBR2 303 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 HAO1Q9UJM8 370 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 ZNF229Q9UJW7 825 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 FOXJ3Q9UPW0 622 aa10.68□□□□□ -0.7
VPS29-211ENST00000553128 CPSF4LA6NMK7 179 aaKnown RBP10.67□□□□□ -0.7
VPS29-211ENST00000553128 MCIDASD6RGH6 385 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 PHYHO14832 338 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 SURF4O15260 269 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 GPR37O15354 613 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 CHP2O43745 196 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 ENSAO43768 121 aaKnown RBP10.67□□□□□ -0.7
VPS29-211ENST00000553128 SLC22A3O75751 556 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 ABHD16AO95870 558 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 SCG5P05408 212 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 GSTM3P21266 225 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 FADDQ13158 208 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 HERPUD1Q15011 391 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 ARMC4Q5T2S8 1044 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 FAM27BQ5VT28 67 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 SLC35E4Q6ICL7 350 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 SLC2A7Q6PXP3 512 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 SLC25A47Q6Q0C1 308 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 NLRC3Q7RTR2 1065 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 NANOGNBQ7Z5D8 188 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 RBM45Q8IUH3 476 aaKnown RBP10.67□□□□□ -0.7
VPS29-211ENST00000553128 MSRB3Q8IXL7 192 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 LYG1Q8N1E2 194 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 SMYD1Q8NB12 490 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 OR4D11Q8NGI4 311 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 VANGL1Q8TAA9 524 aaPredicted RBP10.67□□□□□ -0.7
VPS29-211ENST00000553128 HAVCR1Q96D42 359 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 WDFY2Q96P53 400 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 TRIM15Q9C019 465 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 SIRPDQ9H106 197 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 MEPEQ9NQ76 525 aaPredicted RBP10.67□□□□□ -0.7
VPS29-211ENST00000553128 SLC25A37Q9NYZ2 338 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 LGALS13Q9UHV8 139 aa10.67□□□□□ -0.7
VPS29-211ENST00000553128 A0A1W2PRG6 482 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 F5H5P2 479 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 MLNRO43193 412 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 FMO6PO60774 539 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 FCN3O75636 299 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 HIST1H2ABP04908 130 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 CST2P09228 141 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 BGNP21810 368 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 SLC6A2P23975 617 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 PSMB10P40306 273 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 AQP2P41181 271 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 CDK6Q00534 326 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 COX10Q12887 443 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 ENDOGQ14249 297 aaKnown RBP10.66□□□□□ -0.7
VPS29-211ENST00000553128 ENTPD8Q5MY95 495 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 GCNT6Q5T4J0 391 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 REEP3Q6NUK4 255 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 ZNF613Q6PF04 617 aa10.66□□□□□ -0.7
VPS29-211ENST00000553128 TTC33Q6PID6 262 aaPredicted RBP10.66□□□□□ -0.7
VPS29-211ENST00000553128 HIST3H2AQ7L7L0 130 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms