RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 STARP49675 285 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CAPZA1P52907 286 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PPIAP62937 165 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SRSF3P84103 164 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 FLI1Q01543 452 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SRSF4Q08170 494 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 OR2F1Q13607 317 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SERTAD2Q14140 314 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF345Q14585 488 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TAF13Q15543 124 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 GUCA2BQ16661 112 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 NKPD1Q17RQ9 610 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SCGB2B2Q4G0G5 96 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 GLYATL3Q5SZD4 288 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SHEQ5VZ18 495 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM225Q6GV28 225 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 C11orf87Q6NUJ2 197 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 LPCAT3Q6P1A2 487 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 FDX2Q6P4F2 183 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CD163Q86VB7 1156 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF440Q8IYI8 595 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SLC37A2Q8TED4 501 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PPP1R1CQ8WVI7 109 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 FGF14Q92915 247 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CMBLQ96DG6 245 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PHYHIPLQ96FC7 376 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 NARS2Q96I59 477 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 OR8B4Q96RC9 309 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF471Q9BX82 626 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 NKX6-2Q9C056 277 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SAV1Q9H4B6 383 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TMED7Q9Y3B3 224 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 RHBDD3Q9Y3P4 386 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PHF3Q92576 2039 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 RTTNQ86VV8 2226 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 KANTRA0A1W2PQU2 76 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CPED1A4D0V7 1026 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SULT2B1O00204 365 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 LDLRAD4O15165 306 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 BCL2L11O43521 198 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 MPZL1O95297 269 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 F12P00748 615 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 HLA-AP01891 365 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SLC25A4P12235 298 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 IGFBP3P17936 291 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 ZBTB25P24278 435 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 BDKRB2P30411 391 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 UBE2IP63279 158 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CTAG1AP78358 180 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 IGLV3-21P80748 117 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SPOCK1Q08629 439 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 FUT7Q11130 342 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TEX30Q5JUR7 227 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM240Q5SV17 173 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 C3orf33Q6P1S2 294 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PARM1Q6UWI2 310 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 RHOUQ7L0Q8 258 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 MARCH3Q86UD3 253 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 LDLRAD3Q86YD5 345 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PRR22Q8IZ63 422 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PUSL1Q8N0Z8 303 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SLC22A18ASQ8N1D0 253 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 BPIFB2Q8N4F0 458 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 GVQW1Q8N7I0 195 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 RNF128Q8TEB7 428 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 BADQ92934 168 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 C8orf44Q96CB5 159 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 DGAT2Q96PD7 388 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CST11Q9H112 138 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SLCO5A1Q9H2Y9 848 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 FN3KRPQ9HA64 309 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 CERS4Q9HA82 394 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 SCPEP1Q9HB40 452 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PRMT8Q9NR22 394 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PRTFDC1Q9NRG1 225 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 HPF1Q9NWY4 346 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PURGQ9UJV8 347 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PCDHB10Q9UN67 800 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PRELID3BQ9Y3B1 194 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 NOP16Q9Y3C1 178 aaKnown RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 ZNF175Q9Y473 711 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 KLF2Q9Y5W3 355 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-212ENST00000552491 PRUNE2Q8WUY3 3088 aa4.87□□□□□ -1.63
LIMA1-212ENST00000552491 TMEM200CA6NKL6 621 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 OR6C76A6NM76 312 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 SIGLEC6O43699 453 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 MTRF1O75570 445 aaKnown RBP4.86□□□□□ -1.63
LIMA1-212ENST00000552491 ACTL6AO96019 429 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 RENP00797 406 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 HLA-DQA2P01906 255 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 BGLAPP02818 100 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 CD74P04233 296 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 SPARCP09486 303 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 H2AFB1P0C5Y9 115 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 CD37P11049 281 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 CTLA4P16410 223 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 HTR2CP28335 458 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 CD34P28906 385 aa4.86□□□□□ -1.63
LIMA1-212ENST00000552491 DLSTP36957 453 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms