RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ZNF770Q6IQ21 691 aaPredicted RBP13.56□□□□□ -0.24
CUX1-214ENST00000550008 OVCH1Q7RTY7 1134 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 ARL5BQ96KC2 179 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 UTP23Q9BRU9 249 aaKnown RBP13.56□□□□□ -0.24
CUX1-214ENST00000550008 CCSO14618 274 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 AGPAT2O15120 278 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 CXCL13O43927 109 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 TBXA2RP21731 343 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 FGF9P31371 208 aaPredicted RBP13.56□□□□□ -0.24
CUX1-214ENST00000550008 ZNF767PQ75MW2 155 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 COMMD7Q86VX2 200 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 STEAP2Q8NFT2 490 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 MNTQ99583 582 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 SLA2Q9H6Q3 261 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 PILRAQ9UKJ1 303 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 LRRC37A2A6NM11 1700 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 AKR7A2O43488 359 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 PMP2P02689 132 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 THBS2P35442 1172 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 PRSS12P56730 875 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 EIF5AP63241 154 aaKnown RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 GUCA2AQ02747 115 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 MDGA2Q7Z553 956 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 OR6V1Q8N148 313 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 CCDC54Q8NEL0 328 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 OR6M1Q8NGM8 313 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 OR4K15Q8NH41 348 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 NUDCD2Q8WVJ2 157 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 SMIM3Q9BZL3 60 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 COPS3Q9UNS2 423 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 SCGNO76038 276 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 GAAP10253 952 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 ENPP1P22413 925 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 ETV6P41212 452 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 CLDN6P56747 220 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 C2orf76Q3KRA6 126 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 EIF5AL1Q6IS14 154 aaKnown RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 PXKQ7Z7A4 578 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 SLC43A2Q8N370 569 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 ZNF764Q96H86 408 aaPredicted RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 PRRT1Q99946 306 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 PTDSS2Q9BVG9 487 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 C12orf49Q9H741 205 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 KCNN3Q9UGI6 736 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 NOSIPQ9Y314 301 aaKnown RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 SLCO1B1Q9Y6L6 691 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 BHLHE40O14503 412 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 ICAM2P13598 275 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 DLSTP36957 453 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 GPR3P46089 330 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 MRPL49Q13405 166 aaKnown RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 EXOSC6Q5RKV6 272 aaKnown RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 ZNF546Q86UE3 836 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 MAFIPQ8WZ33 124 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 FOXRED1Q96CU9 486 aaPredicted RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 GPR84Q9NQS5 396 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 WNT16Q9UBV4 365 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 HEATR5BQ9P2D3 2071 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 ZNF318Q5VUA4 2279 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 STMND1H3BQB6 276 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 TP53P04637 393 aaPredicted RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 CTLA4P16410 223 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 LAP3P28838 519 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 MAP2K6P52564 334 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 RPS18P62269 152 aaKnown RBP13.55□□□□□ -0.24
CUX1-214ENST00000550008 BDH1Q02338 343 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 RHOUQ7L0Q8 258 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 SLC22A24Q8N4F4 322 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 OR4D9Q8NGE8 314 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 OR6F1Q8NGZ6 308 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 QPCTLQ9NXS2 382 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 WIF1Q9Y5W5 379 aa13.55□□□□□ -0.24
CUX1-214ENST00000550008 ZNF705EA8MWA4 302 aaPredicted RBP13.54□□□□□ -0.24
CUX1-214ENST00000550008 WNT1P04628 370 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 UBCP0CG48 685 aaKnown RBP13.54□□□□□ -0.24
CUX1-214ENST00000550008 ZNF44P15621 663 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 ABOP16442 354 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 CX3CR1P49238 355 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 MAMSTRQ6ZN01 415 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 VASH2Q86V25 355 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 OR52N5Q8NH56 324 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 PHYHIPQ92561 330 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 SNX18Q96RF0 628 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 PIGQQ9BRB3 760 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 CDH20Q9HBT6 801 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 C17orf51A8MQB3 221 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 PI3P19957 117 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 MSX1P28360 303 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 EPHA4P54764 986 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 MYBPHQ13203 477 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 NEUROG3Q9Y4Z2 214 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 A0A0A6YYJ9 748 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 GABARAPH6UMI1 98 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 DIRAS3O95661 229 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 TBX6O95947 436 aaPredicted RBP13.54□□□□□ -0.24
CUX1-214ENST00000550008 SEMG1P04279 462 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 PVALBP20472 110 aaPredicted RBP13.54□□□□□ -0.24
CUX1-214ENST00000550008 NPY4RP50391 375 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 ZNF616Q08AN1 781 aa13.54□□□□□ -0.24
CUX1-214ENST00000550008 C3P1Q6ZMU1 363 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms