RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 TBX19O60806 448 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 SEC22BO75396 215 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 IL1AP01583 271 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 GPIP06744 558 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 MELTFP08582 738 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 SBK2P0C263 348 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 PATE4P0C8F1 98 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 MYZAPP0CAP1 466 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 OR8G3PP0DMU2 310 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 SDC1P18827 310 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 MAGEA12P43365 314 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 CCT3P49368 545 aaKnown RBP5.41□□□□□ -1.54
LIMA1-204ENST00000549064 POLR2HP52434 150 aaKnown RBP5.41□□□□□ -1.54
LIMA1-204ENST00000549064 PAX8Q06710 450 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 BNIP2Q12982 314 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 LCP2Q13094 533 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 NAB1Q13506 487 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 PDE7AQ13946 482 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 LARS2Q15031 903 aaKnown RBP5.41□□□□□ -1.54
LIMA1-204ENST00000549064 KIAA0040Q15053 153 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 GSG1Q2KHT4 349 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 PCGF3Q3KNV8 242 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 PRAMEF8Q5VWM4 474 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 PRAMEF7Q5VXH5 474 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 Q6YL49 198 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 LCNL1Q6ZST4 164 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 SLC35F6Q8N357 371 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 GPR137CQ8N3F9 429 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 PAQR4Q8N4S7 273 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-204ENST00000549064 FAM76AQ8TAV0 307 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 MGARPQ8TDB4 240 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 UPRTQ96BW1 309 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 ZG16BQ96DA0 208 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 SAT2Q96F10 170 aaPredicted RBP5.41□□□□□ -1.54
LIMA1-204ENST00000549064 MRPL57Q9BQC6 102 aaKnown RBP5.41□□□□□ -1.54
LIMA1-204ENST00000549064 IFT27Q9BW83 186 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF224Q9NZL3 707 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 FBXL17Q9UF56 701 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 HAO1Q9UJM8 370 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 SNX12Q9UMY4 172 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 DSPPQ9NZW4 1301 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 TENM2Q9NT68 2774 aa5.41□□□□□ -1.54
LIMA1-204ENST00000549064 DNAH7Q8WXX0 4024 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 RYR2Q92736 4967 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 IGLV3-9A0A075B6K5 115 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 FAM90A8PA6NJQ4 464 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 A8MXK9 166 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF99A8MXY4 864 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-204ENST00000549064 K7EIL1 84 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 M0R3G1 203 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 SPRY3O43610 288 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 GPR137BO60478 399 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 STX11O75558 287 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 C6orf47O95873 294 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 IGHV1-46P01743 117 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 IGHV2-70P01814 119 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 HLA-DQA2P01906 255 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 FAM90A13PP0C7W8 464 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 FAM90A24PP0C7X0 464 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 CCL2P13500 99 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 DRD4P21917 467 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 FKBP2P26885 142 aaKnown RBP5.4□□□□□ -1.54
LIMA1-204ENST00000549064 MAGEA4P43358 317 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 SLC15A1P46059 708 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 AQP5P55064 265 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 PKNOX1P55347 436 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 KLF3P57682 345 aaPredicted RBP5.4□□□□□ -1.54
LIMA1-204ENST00000549064 COL10A1Q03692 680 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 MMEL1Q495T6 779 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 TMEM255AQ5JRV8 349 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 TYW3Q6IPR3 259 aaKnown RBP5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF813Q6ZN06 617 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF620Q6ZNG0 422 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 Q6ZSV7 163 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 SNX32Q86XE0 403 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF584Q8IVC4 421 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 LRRC8AQ8IWT6 810 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 CLEC4FQ8N1N0 589 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ARFGAP2Q8N6H7 521 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ICA1LQ8NDH6 482 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 OR7A2PQ8NGA2 310 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 OR52N4Q8NGI2 321 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 FGFBP3Q8TAT2 258 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 SYNPRQ8TBG9 265 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 GEMIN6Q8WXD5 167 aaKnown RBP5.4□□□□□ -1.54
LIMA1-204ENST00000549064 PHF21AQ96BD5 680 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 NEURL3Q96EH8 262 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 DAZAP1Q96EP5 407 aaKnown RBP5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ELMOD3Q96FG2 381 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 SLC47A1Q96FL8 570 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 TEX12Q9BXU0 123 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 ZNF350Q9GZX5 532 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 TOR3AQ9H497 397 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 RABEP2Q9H5N1 569 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 PATZ1Q9HBE1 687 aaKnown RBP5.4□□□□□ -1.54
LIMA1-204ENST00000549064 MID1IP1Q9NPA3 183 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 SLC7A8Q9UHI5 535 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 SLC35A3Q9Y2D2 325 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 PPP2R2CQ9Y2T4 447 aa5.4□□□□□ -1.54
LIMA1-204ENST00000549064 CCL27Q9Y4X3 112 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms