RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 HLA-DQA2P01906 255 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 GP1BAP07359 652 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 SPARCP09486 303 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 FBXO45P0C2W1 286 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 NAT1P18440 290 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 ZBTB25P24278 435 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 EIF1AXP47813 144 aaKnown RBP12.33□□□□□ -0.43
VPS33A-208ENST00000543633 GABRA4P48169 554 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 FLI1Q01543 452 aaPredicted RBP12.33□□□□□ -0.43
VPS33A-208ENST00000543633 SRSF5Q13243 272 aaKnown RBP12.33□□□□□ -0.43
VPS33A-208ENST00000543633 ERV3-1Q14264 604 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 NR0B2Q15466 257 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 ODF4Q2M2E3 257 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 GLYATL3Q5SZD4 288 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 ZNF704Q6ZNC4 412 aaPredicted RBP12.33□□□□□ -0.43
VPS33A-208ENST00000543633 ZNF627Q7L945 461 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 OR13C8Q8NGS7 320 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 STK35Q8TDR2 534 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 ZBTB8AQ96BR9 441 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 SLC25A44Q96H78 314 aaPredicted RBP12.33□□□□□ -0.43
VPS33A-208ENST00000543633 PTDSS2Q9BVG9 487 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 NUDT9Q9BW91 350 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 ZNF416Q9BWM5 594 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 TCEAL2Q9H3H9 227 aaPredicted RBP12.33□□□□□ -0.43
VPS33A-208ENST00000543633 UCK1Q9HA47 277 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 LRP12Q9Y561 859 aa12.33□□□□□ -0.43
VPS33A-208ENST00000543633 TMEM265A0A087WTH1 108 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 FITM1A5D6W6 292 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 RNF222A6NCQ9 220 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 NUDT19A8MXV4 375 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 NPIPB7O75200 414 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 SEMA4FO95754 770 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 APOC3P02656 99 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 GP1BBP13224 206 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 DNASE1L1P49184 302 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 CCR5P51681 352 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 INSM1Q01101 510 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-208ENST00000543633 MFGE8Q08431 387 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-208ENST00000543633 EIF2B1Q14232 305 aaKnown RBP12.33□□□□□ -0.44
VPS33A-208ENST00000543633 MELKQ14680 651 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 ELOCQ15369 112 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 TOMM34Q15785 309 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-208ENST00000543633 ACKR1Q16570 336 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 DEGS2Q6QHC5 323 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 SLC35D2Q76EJ3 337 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 TMED4Q7Z7H5 227 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 LYPD6Q86Y78 171 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 OR6S1Q8NH40 331 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 PTPMT1Q8WUK0 201 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-208ENST00000543633 AQP3Q92482 292 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 MMABQ96EY8 250 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-208ENST00000543633 VRK1Q99986 396 aaPredicted RBP12.33□□□□□ -0.44
VPS33A-208ENST00000543633 ABHD6Q9BV23 337 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 PCDHB16Q9NRJ7 776 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 TAS2R3Q9NYW6 316 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 KLK13Q9UKR3 277 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 RAB22AQ9UL26 194 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 KCNK7Q9Y2U2 307 aa12.33□□□□□ -0.44
VPS33A-208ENST00000543633 NOP16Q9Y3C1 178 aaKnown RBP12.33□□□□□ -0.44
VPS33A-208ENST00000543633 SPTY2D1-AS1A0A0U1RR47 76 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 OR14I1A6ND48 311 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 METTL21EPA6NDL7 271 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 TMEM150CB9EJG8 249 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 ALG1L2C9J202 215 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 M0QYG6 137 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 GPANK1O95872 356 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 IGKV3-11P04433 115 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 DRD1P21728 446 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 DLSTP36957 453 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 GSK3AP49840 483 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 POLR2HP52434 150 aaKnown RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 PPIAP62937 165 aaKnown RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 ADAM8P78325 824 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 PAN3Q58A45 887 aaKnown RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 RNASE10Q5GAN6 216 aaKnown RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 TMEM244Q5VVB8 128 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 RELL2Q8NC24 303 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 STOML3Q8TAV4 291 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 MITD1Q8WV92 249 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 ADIPOR1Q96A54 375 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 ELF4Q99607 663 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 C8orf33Q9H7E9 229 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 TMEM185BQ9H7F4 350 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 TRIOBPQ9H2D6 2365 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 CPED1A4D0V7 1026 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 A6NIZ1 184 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 TO15178 435 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 SLC16A7O60669 478 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 ICOSLGO75144 302 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 ALOX12BO75342 701 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 HLA-AP01891 365 aaKnown RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 CELA2BP08218 269 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 ICAM2P13598 275 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 CTSEP14091 401 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 CAPZBP47756 277 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 ARRB1P49407 418 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 BLKP51451 505 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 LUMP51884 338 aaPredicted RBP12.32□□□□□ -0.44
VPS33A-208ENST00000543633 RAP1BP61224 184 aa12.32□□□□□ -0.44
VPS33A-208ENST00000543633 RAP1AP62834 184 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms